Array 1 44800-44277 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF954534.1 Megasphaera massiliensis strain NP3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 44799 36 100.0 42 .................................... GCGTACGATCCGGAAACAACCAGATATTTTCCGTGGCTTTTC 44721 36 100.0 37 .................................... GGTAGATACTGCCACCATGCGGCTTGAAGCAATTGGC 44648 36 100.0 37 .................................... AAGTCAAATCCAACATCGATTACATACCTATATTCGT 44575 35 72.2 80 .....................-G.TTTA...AG.CT CCTTTTAGGAAAAGGAGTTTGTGCCATAGGGGGACCGAAACAGGATTGTCTTGATATTCCGCGGCTTTCCGGGTTTATCA 44460 35 88.9 36 ..AA.A........-..................... TCCGGCAACGGCGCATAAGTGGCAGAAATCGTCATC 44389 36 91.7 41 ...A.A....T......................... TTTACAAACCACGCAACTTCTTCGACGGCTTTATCGGATAA 44312 36 91.7 0 .C.A.A.............................. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 7 36 92.1 46 GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : CGTCGTCAACCGTAAATTCAATGAAAAGACCCGCCTTTTCGCCGGCATCGACAACGTCTTCAATAAAAAGATCGACGCCATCTACCTCGACGGACGCATTTGGCGCACGGGCATTGAAATTACCTTCTAATACACCGGCTTCTTCCTCGTAAGTACCGGTCAGCCAATCCCTTTTTCCCTATAGCCATGTTCCGGACGAATGCCGTTCGGGCATGGCTTTTTTTATGGAGTTAACGCGACTACTCGTTTGACAATAAAAGTCGAAAAACGTATACTAAAGAAAAGTCAAAGTACGACTGACCTTTGGAAAACCTATTTCAGGGCCAAAAACCCCGTAGGTTTGAAAATTTCCAAAATGGCTACAAATGGCGTAACCAAGCCGATAATCGCCATTGCCTGATTTTTGTTTTTCACCTGGGTCCCCGAAAAAGACGAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGAGAGACAGA # Right flank : GTTCAGTTGACCAAGACATGCGATCTGTGTTGTTGGCAGTCGCATTACCAAAATCCCCAGGTCTAAATTGACTCCTTTTAGAAAAAGGAGTTTGTGCCATAGGGGGACTGAAACAAGCTTTCGCCGAACAAGTTTGACCAGCTCAACCGTCGCATTACTAAAATCTCCAGATTTAATTGGACTCCTTTTAGAAAAAGGAGGTAATGCTATAGGGGGACTGAAAACTGAATCTTGCATGAGAAAAGCCGATATAGGGCATCTTTTAGGGATGTCTTGTATCGGCTTTTGTTAGGTTGTTTTATTCTGTTTGTAAGAATACTTTTGGAATGATAACTTACTTGTCTTCTAAAAACTCTAACTTTGTCTCCAAAGATATTGATCCTCATGGAAAAGACATAGCTGCTTTCGTATAAAAACGTAAAACGACCTTTAAAGGCAAATAAGATCATCGTTTGACTCTGAATAAACAGGATGTTCTGTGACTTTGTCATAGGATATCC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.63, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 68065-67518 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF954534.1 Megasphaera massiliensis strain NP3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 68064 36 100.0 40 .................................... ATTTCAGAAATAAGTTTGTATCGTATTATGTAGATAGAAG 67988 36 100.0 36 .................................... TTACATTATCAAGTTCGTCAAATAATGCACGTTGAC 67916 36 100.0 34 .................................... TCAATATCGCAATTATAATATATAACCTTAAATT 67846 36 100.0 38 .................................... GAGTATAACCAACTCCCGGACGGATTTCCGGCAGCCGC 67772 36 91.7 36 ...GC.T............................. GTTTTCGCCTCTGATCTGCGGCCCAGGGAAGATCAG 67700 36 91.7 38 ...GC.T............................. ATCGTAAAGAAATTGACGACGCATCCGACGATGGCGGA 67626 36 94.4 37 ...G.C.............................. ATTAAAATATCAAAACGATTCCTAAACTTACGGCAAT 67553 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 97.2 37 GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : TCCCCGTAAGGGGACTGAAACTGTACATAACAGTAGACTCTCAACTGGACTGTCATAACGTCGCATCACCCGATTCCCCGTAAGGGGACTGAAATCTTGTTTTGTGCGGAAACCCTGCAGACGCGAGTTAAAAGGCCATCTACGGTCGACTATATGACTTAGATGGCTAAGAGGGAGAAGGCGCTCTTGCGCCCGATGAGAGGCATTTGCGAGGACATTCGAAGATGAGCCCTTTTCCGAAATTCGTTTGACAATAAAAGTCGAAAAACGTATACTTGAGATAAGTCAAAGTACTACTGACCTTTGGCAAACCGATTTCAGGGCCAAAAACCTCGTAGGTTTGAAAATTTTCAAACCTGCGAAAAACGGCATAACCAAGCGGATAAGCGGCACTGCCTGATTTTTATTTTTCACCCGGGTCCCCGAAAAAGGCCAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGGGCGGGTACTGGGAGGCAGA # Right flank : GGCCAAACAAGTTTAACTAGCAATACTAATAACGCCCACGTCAGGGTACCGAAATCCCCGGATTTAATTAGACTCCTTTTGGAAAAAGGAGTTTGTACCATAGGGGACAGAAAACTGAATCTTGCATGAGAAAAGCCGATACCGTCATCTATCTGGGATGTCTGGTATCGGCTTTTGTCATGGAAGTTATTTTTTTAGGTACTAAAAATGTGCGTACTTGTAAATTTTATACCGGTAAGTATAATGAGGATAACCCGATGACGGGGAGACCTTATGCGAAAAGGAGACTTGACCATGGAATTTGAACCATTGATGAAGGATCGTTATTCGGTCCGCAAATTTTTGGATAAAAAAGTAGAACCGGCCCTCGTTGATAAACTGAAGGAAGCCATCATGCTGGCGCCGAGTGCCGTAAACTATCAGCCCATTCGGGCCTGGGTCATCGAATCGAAGGAGAAACTCGAACAGATCAAGGCCATCACGAAATACCACTTCCAGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : GTCGCATTACCAAAATCCCCGTAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 93363-93175 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF954534.1 Megasphaera massiliensis strain NP3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 93362 36 100.0 40 .................................... GTGCCGCAGTAGACCAACCATTTTAATGCCCGCAGCCAAC 93286 36 100.0 40 .................................... ATACCCGTGCCGTTCGCAAGGCGTAACTTAGTCTTTAGCC 93210 36 69.4 0 .C...................G.GTTAC.TG..CT. | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 89.8 40 GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : TACGCGTTCGGGTCTACGAAGATAAATAGAGAATACGACCATCATATAAAAAGCTGTCTCGTCAGAGGCGGCTTTTTGGCGTATAGAAGCTATCCGATGGGTCCTATCGCGGAGTCCGGACGGAATGTTCACCCCATTTCGAGGGCGGTTCGCGGCACGGTACCGAAACACGACGAAGACGCAAAAAGAGCTCTTACAATCGATCATAAGTCCTTGCAGGGAAGCTTCGACCTCATGTTAGAAAGGTTTGACAACAAAAGCCGAAAAAAGTATACTAAAGAAAAGTCAAGGTAATATTGACCTTTGGAAAACCTATTTTAGGGTCAAAAACCGCCTAGGTTTGAAAATTTTTAAAACCGCGAAAAACGGCATAACCAAGCCGATAATCGCCATTGCCTGATTTTTATTTTTCACCCGGGTCAGCCAAAAAGGCGAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGGAGATAGG # Right flank : CTTTTAGAAAAGGAGTTTGTGCCATAGGGGGACTGAAACGTTTCTTCTAAATCGTTTTGACGGAGGTTTGTTGACGCGTCGGCGAGCGCGTAAAATTGAAGATGGCATGAAAAAAAACGGTACCGGCATCGGTGAAGGATGTCTGGTACCGTTTTTGATGATGGGCGTCATGTTGTGGGAGTCTGACGACGGGCTGTGCCGTCTCTGTCAAGGGGGACATGAACCGGCGAACTTCCAGCCGAATTGGGGCTCGGGCTGACGTCTCGGAAGGGGACTACAGGGCTGCAGAAGGTTTGAGGCCCTTGTGCGTGCTCGGGCTCGTCTGATTCCTTCGGTCCTTGGACATGACGGACTCTTTGTGAGGATGAAGGAAATGAGAAAAATTCCTCTTTTCTCGATACCATAAGGTATCTGACTATATGAGTTTACAAAAAAACGACTTAGAGCTTGGTTTAAACTCTTAAGTCGCTTGGCATAAGCTGTTATCGATTTTACATTCA # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 144873-144684 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF954534.1 Megasphaera massiliensis strain NP3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 144872 38 100.0 38 ...................................... GGGACGTGCTTGAATCCGTTGAGGTCCGACAGGAAGTC 144796 38 97.4 37 .C.................................... GTTTGGGCGTTATGCCCGTTCGGATGCCAGTCGTAGC 144721 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 3 38 99.1 38 GAGTCAGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : CTTTTTTAGAAAAAGGAGGTAATCCATAGGGGGGGACTGAGACTCTTATGAAGCTTTCGCCAAACAAGCTTAGCTAGCCATGTCATATTACCGATTTCTCCGCAAGGAGGAAAAGGACGTATTCTTAATCAATCTATTTTGATTCACTAGGATGTTGTGTTACTGGAATTCCCGAGATGGGCTGTGATGGCTTTTCTTGGGGATTTGTTCTGTTTGGCCCTTCGTTGCGGTGCAGTGGTTTGACAAGGTGCAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGACTTTGCCTGACCTTTGGAAAACCTATTTCAGGGTCAAAAACCCCGTAGGTTTGAAAATTTCCAAAATGGCTACAAATGGCGTAACGAAGCGGATAGACGACACTGCCTGATTTTTATTTTTCACCCGGGTCCCCCGAAAAGGCGAAAAAAGCCTGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGAGGGATA # Right flank : ACTACGAAGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTCAGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTCAGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 146825-146045 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF954534.1 Megasphaera massiliensis strain NP3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 146824 36 100.0 38 .................................... GCCGCAACTGGTTTTTCGTTTTTACGTCGTTTATCCAC 146750 36 100.0 38 .................................... AAATCTATGTTTCTTATAAATGCTTTGCGTTCGCGCGT 146676 36 100.0 36 .................................... TGATAATCAAAGATCTTGTAGATAATACGATTCGAG 146604 36 100.0 39 .................................... AACGGCCAACAAATCTAAATAAATACAGTAGCATAGTAA 146529 36 100.0 40 .................................... TTTAACAGTATTTAATACATCTATTCCTTTATCTATAGCA 146453 36 100.0 39 .................................... GATTGCAACCCTGGATTTAAACCAGACTGCGTCGTCGGT 146378 36 100.0 37 .................................... AGCCGTAAAACGAATTGTTCTTCTTGGATTCAATAAT 146305 36 100.0 40 .................................... TCACGACATCTTCCGTCGTTGTCGTATTCTGTTTCGCCAG 146229 36 100.0 39 .................................... GTTTGGGCGTTATGCCCGTTCGGATGCCAGTCGTAGCGA 146154 36 100.0 38 .................................... GATGATTACGAGAAAAGCTTTATCGAGCAGAACGCCGA 146080 36 88.9 0 ................................TTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 99.0 38 GTCAGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : TAAGAAAGGGCCGAATACAGTATCTCTCCGAACGGGGACTGAAACACTTTAAAGCCAACATACTTTTGCTGGTTGATTATGACCGTTAAGACACCCATCCCCGTAGGAGACGGAACACTTTTGTAATGGCCGGTACAATTTTCTTTGCTTTGGGTAAGAACTTGAATCCCCAAGGTGGGCTGTGATGGCTTTTCTTGGGGATTTGTTCTGTTTGGCCCTTCGTTGCGGTGCAGTGGTTTGACAAGGTGCAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGATTTTGTCTGACCTTTGGAAAACCTATTTCAGGGTCAAAAAACCCGTAGGTTTGAAAATTTTCAAAATGGCTACAAATGGCGTAACGAAGCGGATAGACGGCACTGCCTGATTTTTATTTTTCACCCGGGTACCTGAAAAAGGCCAAAAAAGCCTTAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGAGGGATAGA # Right flank : AAGGCGTGAAAAAGCCATGGATTTATGCTTTTTTCATAGATCCATGGCTTTTCTATTGGCTGTATTCTATTCTCATGATGTTTTTTCAAAAATGGCGGACTCTGTTTTATTGTATAAACAAATCTCTCCCACAACAGTGGCAAACTGTTGCTTCTGGGCGGCTATATTCCCCACAATATGGGCATTTATGGAAGCCATTTCTAGCTTTTCCTCTATCGTTAGGTTTTATTTTTAAGCTATGAATCATTGCTATTATCCACAAGGTATCACTATAGATAAACCATTTAGCAAAACTTCTACCCTTACGATAGGCAATATTTGATGGAATTAACGCGAGTAGTGCAGTTAAAAAATAAATTGCACTAGCTTCGCTGTCGGAACCGGACAACAAAAATGATGGCAATATGGCTCCAAAGAAAATACCCATGAGATTGTTCATAAGATAATGTGTCTGTGTTGAAATGGTCAATGTTATCGCCTCTTGTTATATATATCATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCAGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 272634-273060 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF954537.1 Megasphaera massiliensis strain NP3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 272634 32 93.9 33 .........-...G................... TTTTGAAGGGAGATAAAAGGTATGAGCAAGAAT 272699 33 87.9 32 .C........C.......A.............G TAAGAACACTATATCAGAAAAGCTGAGATATG 272764 33 97.0 33 .............C................... CGCAGCTGTCGTTCTTTTTCTTCTCTTTTTTCG 272830 33 87.9 33 ..T.T.....C.....................T GAAATACCGAACCGGTGCTTGTCCAAAGAAATA 272896 33 100.0 34 ................................. TACAGTTCCTGCACCGTATCGAGCGTCGTTTTCG 272963 33 100.0 32 ................................. TTACGCCGATGAACACCTTGATGGCGTCAATG 273028 33 87.9 0 .................C.....A..C.....T | ========== ====== ====== ====== ================================= ================================== ================== 7 33 93.5 33 GTCGCACCCTTCATGGGTGCGTGGATTGAAACA # Left flank : TTTCGACGAACTTCATCGTCTCCAAATTTAGCCAAATACATATTAATATTTGACTCATACAACTCAATAGTCCCAAACGGTCTAGTTTCAGCTATTGCATGAGAATGCTCTGGAGATATCTTTATTTCATACTTATATTCTTTGCTTATTAGTTTATCACTCAAATAAGTAAAAGCTACCGAAATGAAGTCAGTATAGTCCGAAATAGTTTTCATTGCCACATCGCTCCTTAAAATATTATTCTATATTCGCTATCATTATAATATATAATTCTTCGTGTATTTGCAAAAAATAAAAGCCCCCCGAAGGGGTCTAATACTTTTATCCTTTTAAAAGAGCCAGCTCTTTGTCGAGCTGCTTAAGTATATCTGAGTCTTTGTGACTCAGACAATACGCCAACCACTTTAAAGCACGCGCCCATCTGCTGGGATGGGACGCGTGCAATATGTAGGTGCAGGGACCCACTACCGACAAACTTATCGCCGATTAAGTGGGAATTA # Right flank : TGGCAAAAAGAATACCCTCTCTACACCGGTAGGGAGGGTATTTCTATGCTCGAATCAGTCTTTGAAGTAAGGCTTAAACACGGAACGATTCGGTTCTTTATGTTGTTTTTTTTCGGAGCGCTGGTTGTTACGGAAGGTGCCGTGGTTATTGGAGTCGCGATTTTTCGGAGCGAAGTGACGACGGCGTTCGCCTCGTTCTTGGCCGTCTTCTTTTCCGTTGCGGCGGTCTTTCCGATTGCGGTCGTTGCGGCGATAGTTGCGGTCGCGATTATTTTTCCCTTGGCGGCTGCGATGGACGCGGAGAGGGGCTTCTTCGGTAATCTTGACGGGCGTCGTGTCCGGTTCTTTCGTGAGCAGCTTGATAGCGGCTGCAACGAGGGACGCCGAGTCGTAGTTTGCCAGGAGTTCTTCGGCATTTTCTTTATAGCTTCCGAAGTTGCCTTCTTCTGCGGTAGCGGCCAGGTTGCGGATGGCTGCCTGCTGGGCGCCTTCTAAGGCTT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 514948-514391 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF954537.1 Megasphaera massiliensis strain NP3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 514947 33 97.0 32 ................................A TCTCTTATAGCTCTATACTTTATACTCTTATC 514882 33 97.0 32 ................................A CAGCCTGGCCGATAGATACGGGCAATCGCCGC 514817 33 100.0 34 ................................. CCGTGCGCCGCTACTACCCTCAGGGCACGTACTC 514750 33 100.0 33 ................................. ATTGATGACGACGTTCAGAGGTATGGATTAATC 514684 33 100.0 33 ................................. CGGCGAATATCGGCAACGGCTGCTTGAAGAAGC 514618 33 97.0 33 ................................A TATAGAGATAGATATAAGAGTACGAAAGATATC 514552 33 93.9 32 ........................G.......A TAAAAAAGTACAGAACGGAGTCTGGCTTGTAA 514487 32 90.9 33 ...........-.G..................A ATGAGTAGCAATTGATTGCCATAATGATCCGTT 514422 32 81.8 0 .......T....G-.A...............AA | ========== ====== ====== ====== ================================= ================================== ================== 9 33 95.3 33 GTCGCACCCTTCATGGGTGCGTGGATTGAAACC # Left flank : TCCTGGGCTGGATCATCGACGATTATCGAAAGAACGTTGAAAAAATGATTGCCTCGAAATGTGAGGCCTTGGAAGCGGCCCTCGGATAAGAGGCGGGTTAACGTACAAAAAAATGGACGAGAGTGAGAAATAGTCGCTCGCGTCCATTTTTTATGGTTGGAAAAATTAGGATTGCAGCCTTAAGGGCGTTATGGACGCGGCGGGACGATATTATGGTTTTAAGTAAAATGGTGCTATAATGAAATTAAAAGTAACGGGAAATAACCATTGAGCCGGGGGATGCTCGGAGCATAGGAAATCATATAAATCTATGGCGGAAAGCATGCCGTGAAAACGTACGCAGTGCCAAAGTATAGTGAACATTCTTTTTGTCGATTAAAAATCATGATGAAAGCCGGGGAAATTTGAGTAAATCCCCTATACGAGTAAGAAAAAACGTGTCTGTGGGGGCCTATCCCCATAGATGCAAACAAAAGTGACTGTAAGAAAACACTTTTGCT # Right flank : ACTCGACTATATAGATGAAAATGTCTACCTGTTTGCATCGCACTCCTGATGAGTACATGTGTTAAGGCTTGCTTATGACAATGTTTTTCTGCCCTTTTTCAACTTTTCTTCTCATGAGGCCCTTCGTTGACAGTCTTCTATTTGTCATGCTATAGTAAAAACGATATAATATAATGAATAGGTCAGGTGTCTCAGACTTAATAGAGAAGCCGGTTCAATTCCGGCGCGGTCCCGCCGCTGTGAGGTGGAGCCAGGCTGCATGATGTCACTGTACGTTTTTGTATGGGAAGGCGCAGCTTTGGCTATGAAACCAAGCCAGAAGAACTGCCTGACGGATAATCACCGATAGACCTGCGAGCGATGGGAAGGAGATTGTACGGAGCATATTCGGGGACTGTCGTCTATACGACGGTCCTTTTATCTTTGCAGCCCTTCTCTTGCAGGTCCTTACAGGAAAGGGGTTTATTCGTACCATGGAAGCGATGATCAATGGTTTTCAG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.80,-7.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 526158-525601 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF954537.1 Megasphaera massiliensis strain NP3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================================ ================== 526157 23 87.0 47 G.A.....C.............. TTTATTAACATTATTATTCCTCCTTTTGGAATACAGTTTAGACCCAT 526087 23 100.0 46 ....................... TTTCTGTCCCTTACCTTGATTATATTATATCAAGGTTAATTACCTT 526018 23 95.7 51 ..A.................... TATTCAGTCTTGATACCTTTGACGGAACAAAGTTCCGACGTTAAGAAACAC 525944 23 91.3 51 .....T..C.............. TTATACGGAGAAACCCATACTTCTACTTCGTGACCGAACGTTAATTACCTA 525870 23 95.7 49 ..A.................... CGATTTTGAGCGGCGTCATAAACTGTCTCGTTCCTGTGTTTAGAACCTG 525798 23 100.0 80 ....................... TCGTCACACATTGGGAAAGGGTGACAACACGCCGCCGAGTTAAATACTCCTTTCTTTGTGAGAAAGAATCTAATGCAGCG 525695 23 91.3 49 ........C............C. CGCGCTGCCAAGTCTACGACCACTGGGAAGCTTTCATCATTAAAACCTT 525623 23 87.0 0 ..A..T..T.............. | ========== ====== ====== ====== ======================= ================================================================================ ================== 8 23 93.5 53 AATCCCCGAAAGGGGACGGAAAC # Left flank : GACCCTCTATAAACACGGCCTTATCTCACGGAACATCAAAATTGAGATCCAGCCCGATCCGGCCATGAATGAACAATATCATATTGCCATTCCTAAGTAGGGATGGTGGGGAATACAGGAGACTTGCCTTTTGATGGGCGAGTCTCTTTTTTCGCTTGGACAAATGTCGGGAGGACCTCTTTTTCAGGGAGAACTTTTAAAGAAAAGTGCTTCATAGCGACGGCATCGTCGGAAAGTATTTCAATATACGACAAGGGACTTCAAAAATATGGTATAATATGAATAGATTCATGGATTTTATACCATTTAGCCCCGATGTGATGAAATGGCAGCCTTTGAGGATTTTTGAAAGCTAATTTCAGCGAAAAAGCAGAAAACAGCCGAAAAATAAAATCCGCCCCGCAAATGGCCTTTTCGATGGTGTAACGAAGTCATTTGTAAGAGGCTGTTAAGGACGATTGAACAAGCTCCTTTCTTGGTGAGAAAGGAGTTTATGTAAG # Right flank : CCCATATGGACGCGCACGGTTGTCCGTTCGCTCTTTTTGATGTTAAGAACCATAATTCCCGGACCTACTTGGACTCCTTTCTTGGTAAGAAAGGAGCTAATAAATAGGGGACGGAAACTCATCGAGGTGTGGATCATACGGGCAACTCATCCAGTCGTTAAGAAACACAATCCCCGGATGTAATGTGACTCCTTAAAAAAATGGTATAATGACTTTAGAAAAGGTGTTAATGGCTTGTGTTTTGTTATAATCTATGATGGTCTAGTAAGGTTTAAAGAATCTTGATGGAACGAACAGGAGGGGAGAACATGGTACAGGCTATTGAGGTGGCAAGGTTTTTTATCAATATTGCCAATACGATCCCCACAGACGATTTGATGACCAACATGCGAGTGAATAAGCTCCTGTATTTTGCACAGGGAGAATGTTTACGGCAGTTAGGAAAGCCTCTTTTTGATGAGGATATGGAAGCTTGGGATTATGGCCCGGTGGTTCCTTCT # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.66, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGAAAGGGGACGGAAAC # Alternate repeat : AAACCCCGAAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //