Array 1 361420-363034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAZ010000002.1 Salmonella enterica strain 137 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361420 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361481 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361542 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361603 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361664 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 361725 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 361786 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 361847 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 361908 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 361969 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362030 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362091 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362152 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362213 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362274 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362335 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362396 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362457 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362519 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362580 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362641 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362702 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 362763 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 362824 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 362885 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 362946 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363007 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379167-380643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAZ010000002.1 Salmonella enterica strain 137 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379167 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379228 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379290 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379351 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379412 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379473 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379534 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379595 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379656 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 379717 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 379778 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 379839 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 379900 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 379962 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380065 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380126 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380187 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380248 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380309 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380370 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380431 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380492 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380553 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 380614 29 96.6 0 A............................ | A [380640] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //