Array 1 198931-199692 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJNT01000002.1 Streptococcus mitis strain KLC12 D8853_contig002, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    198931	    36	 100.0	    30	....................................	TGTAGAGTTAGGAAAAACTGCTCTAGAACT	
    198997	    36	 100.0	    30	....................................	TCAATGTTAAGTCCAAAGCGTTCTGGATCA	
    199063	    36	 100.0	    30	....................................	TGTAGAGTTAGGAAAAACTGCTCTAGAACT	
    199129	    36	 100.0	    30	....................................	TCAATGTTAAGTCCAAAGCGTTCTGGATCA	
    199195	    36	 100.0	    30	....................................	CAGATGATATCCAAAGACTGCTGCACCAGC	
    199261	    36	  97.2	    30	................................A...	TCAGCACCTTCACATCACGGCCAACCGCTT	
    199327	    36	 100.0	    30	....................................	ATGGTAACTGGTATTGGTTCGACAACTCAG	
    199393	    36	  97.2	    30	.................A..................	TGCAGTCAAGAACACGAATACCGCATTGAC	
    199459	    36	  97.2	    30	.................A..................	CCAATTTAGGTATTGCGTATATTGCAGCCG	
    199525	    36	  97.2	    30	.................A..................	TGGTAGACCTTATGGAATATGGTATTTAGG	
    199591	    36	  97.2	    30	.................A..................	ATAAGGATAAGACTCTGGATTCTGTTATAG	
    199657	    36	  91.7	     0	.................A................TT	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  98.1	    30	GTTTTTGTACTCTCAAGCTTTAAGTAACTGTACAAC	                              	       

# Left flank :   GGATGATTTTTTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGAGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTATATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAATAAAATTTCGTGTTGAATCAATCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATATTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG
# Right flank :  TTAGATAATATTAGCGATTCTCTAACTTATAAAAAACCGCTCAACTGAGCGGTTTTCGTCTATTCATACCCTTTTACAGTACCCATGTACGGATGGCATGGGCAACACCAGATTCATCATTAGATTTAGTGATGTATTTGGCGATTTTTTTGATTTCTGGATTTCCGTTTTCCATGACTACAGGGTTGCCAACGACTTCCAACATGGCACGGTCATTTTCTTCGTCACCGATAGCCATTGTTTCATCTTTGGTCAATCCGAGTTTTTCAGCTAAGTGAGTAATGGCTGAACCCTTGTCCACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCGGATTTGTTGATAGAGTAGCGCTCGTAAAATTCGGCTGGTATCTTTTCAATGGCAGCATCGAGAATCTCAGGTTCATCGATGAACATACATTTGACGATTTCCTTGTCAGCCATTTCTTCAGGTGTACGGTAGAAGATAGGCATGCTGACGAGGGTTGATTCGTGC

# Questionable array : NO	 Score: 6.04
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGCTTTAAGTAACTGTACAAC
# Alternate repeat :   GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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