Array 1 1228868-1231343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045350.1 Vibrio aquimaris strain THAF100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1228868 33 100.0 34 ................................. CTGAAAATTAAAGGCGAGTAGTCGTGATTTTTAG 1228935 33 100.0 33 ................................. AGTTCGCGACCAACACAATAAGCAATATATACA 1229001 33 100.0 34 ................................. TGCAATTGTTACCTTTAGAGTTTGCGCTCTAGAG 1229068 33 97.0 33 ................................T TTGAAGCAGTCAGCAGATTGAGAGGACAGATTA 1229134 33 97.0 32 ................................C TTTATGGTTCTCATTTGCAATAAAAGAGTTAT 1229199 33 97.0 33 ................................T ATTAAACTATTATTAGAGCGATAAGCTGCTTGA 1229265 33 97.0 32 ................................T GATCGATGTGGTCAAATTGAATCTTGGCCAGC 1229330 33 100.0 33 ................................. AATCTTATTGTTCAGTCAGGGCCAATCATTGAG 1229396 33 100.0 34 ................................. TTGTCATTAGGTAATAAAGAAATTAACACATGAC 1229463 33 100.0 34 ................................. GGATGTCACCGTATCTGTATCGGGTTCTAATGGC 1229530 33 100.0 34 ................................. ACCAAAGTATTACCAAACTTTAACGGTGTAGGCG 1229597 33 100.0 35 ................................. ACTAAAGCTCTTAACTTAGTCATCAAATTATCAAT 1229665 33 97.0 34 ................................C ACTAATTCGTCTGTATTGTTAGTTTGTTCTATGA 1229732 33 100.0 33 ................................. TTACAGTAGTTAGCAACTTGTACCTTTTGCTCC 1229798 33 97.0 33 ................................C TTACGTCTGGTTATAGCTTCCTCCTTAGTCTCA 1229864 33 97.0 33 ................................T TGTTTATTCATAATCTGAATGAGACCGCCATTT 1229930 33 100.0 34 ................................. CATTTGGTTATACGTTCAATCATCATCTCTACTT 1229997 33 97.0 32 ................................T TGAGCCTCGCGCTGCTTTTTTATTTCGCCGAA 1230062 33 100.0 32 ................................. GGACTAATGACCAATTTGGAGTTAAGAGCCAA 1230127 33 97.0 33 ................................T TTTGCTGATGGAATAACTATAACTATCCGCTTA 1230193 33 97.0 33 ................................C GGAGGAGTTTTATATTCCTGAAGCTACGCAAAT 1230259 33 100.0 32 ................................. TCTTTTTCTACAAAACCATCGGGTGAAAATAA 1230324 33 100.0 33 ................................. TCCAACGGATAGCATGTAAATTCTGTGCTTCAT 1230390 33 97.0 32 ................................T CTTTAATTGAAGCAGTTGGTTAAGTGAGGCTG 1230455 33 97.0 32 ............A.................... AATTCAATATTGATCGATTCTCCATTAACTGA 1230520 33 97.0 33 ............A.................... ATAAACATGCATCTCTGATTGATACTCTTTTGC C [1230551] 1230587 33 93.9 32 ............A...................T TGTTTGGCGGTTTCACCATTGGAATAGATATG 1230652 33 97.0 34 ............A.................... GCTATCACTAGCAGCGTTTCTAAGAAAGAACCAC 1230719 33 97.0 33 ............A.................... AGACTCCATAGCTGATTCAGTTCACAGAGTGTT 1230785 33 93.9 32 ............A...................T AGTTTCCCGTATCACATGGAGATGTGTAGGTG 1230850 33 97.0 32 ............A.................... TTGATGCTATCGCCGACAATGTAGCGAATACG 1230915 33 93.9 32 ............A...................T TAACTCCACGGTACAGAGCCTAATGCCCTATT 1230980 33 93.9 34 ............A...................T TTAAACCTCGTGGTGTTGTTATAGCTGCACATGA 1231047 33 93.9 33 ............A...................C TTTTGATATTCGAAATTATATTGATAAAGCTGC 1231113 33 97.0 33 ............A.................... GATCCTGATAAAGGAGTGGAATCGTGTGTTAAA 1231179 33 93.9 33 ............A.G.................. AATTACTGGCACTCTGACTATCAAAACCATCAC 1231245 33 97.0 33 ............A.................... ATTGACTGAGCATCAACCTCATCAGCTAATGTC 1231311 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 38 33 97.5 33 GTCGCACCTCCCGCAGGTGCGTGGATTGAAACA # Left flank : TTTGTGATCAAAAAATAAGGAGAGTGAACCATGATGATATTGGTCACCTACGATGTATCCTTTGATAGTAAAAATGGTCAAAAACGCCTCAGGCAATTAGCAAAAGTATGCTTAGACTATGGCGTAAGAGTGCAATATTCTGTCTTTGAATGCGAAATAGATGCAGCACAATGGTTGCACTTTAAAAACAAGCTGCTGTCAATTTACGACTCTGAGGTAGATAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAACACTACGGTGCGAAAGTTGCAATAGACATATTCAGAGATACCCTTATTTTATAATCGCTAGGCTTTAGTTCTCAGTCAAACACTTGAGATCTAGCGATTATATAAGTTCTTTAAAAATATAGGAAACATTGATTTGTATAGATTCACACAAAATTGTTTTTGCTCTGCTGAGTAAAGTTAGCGGTAAACAGTAGAAAGTGCTAGTCTATACCAGCCTTCAACAAGAGGCA # Right flank : CCTCTCACCATAGCTGGAATAACTTTAGTAGCAGGTCGCACCCATAGGTGCTGAAGAAAGGGTTAAATCTTTCCTTTTGCTCTTCCTAATTTTATCCATAAGCTAGCCAATTCCATTAAATCGTATCATGCCCCATTCGTAAGTACCTCCCACTCTACCCGTGTTTGTCCTCGAAGATAGCGACTAAACCTGTCACTTAGAGCGTTTTGATAGTCAAACTAACTATTTGGTTGGTAAATGCCGCAAAACGCCTTGTTAGGCGTGATAAATAATTGAAAATATTGATATGATTTGGTTTATTTTTTATTAAGGCTAACTCCCATGCGGTATGAATCTTTCCCATATGTCCCAGAAGAAAGACAAGAAACCACAAGAGAAAGAGCAGCGCGTCAACGTCAAGAACGCAGAGCGGAACTTACTTATACCGCTAAGGACCAGAAACGTTGGGCCGAAAACAGAGAACGCGTTCTTGCTGAGCGTAAATTGGCTGAAGAGTGGAA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCCCGCAGGTGCGTGGATTGAAACA # Alternate repeat : GTCGCACCTCCCACAGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //