Array 1 518533-517723 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUZI01000001.1 Photobacterium piscicola strain NCCB 100098T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 518532 28 100.0 32 ............................ TAATGCAGCCATTAATTCAGGGGAACCCGTTT 518472 28 100.0 32 ............................ GTCGGGGATATTTACGGGTACCCAATTGCCAA 518412 28 100.0 32 ............................ AGGAGTGCTGGCTCGTTGTTACCGCGCCAGAA 518352 28 100.0 32 ............................ AACAGCGGGCATTGCTTGGGTTTTCAGCCATA 518292 28 100.0 32 ............................ AGAAAATACCGCCATTATTGATCCTTCTGCAA 518232 28 100.0 32 ............................ TAATCCAGCTCCGAATCGTGAATTATTAGCTT 518172 28 100.0 32 ............................ TTTAGGTTATCGAAACCAATTAGAGCATCTTT 518112 28 96.4 32 ........................G... ACTTGTAAATTGTTGGGTTGGTAATAAGAAAC 518052 28 100.0 33 ............................ GACCCACACCTAGCAGTAAGCGCACGCACTAAT 517991 28 100.0 32 ............................ AAGACATGACTGATATTCAGAAGAAGTTTATC 517931 28 100.0 32 ............................ ACACCAGCCAGTGCGGCGACAAGTCGCAAACC 517871 28 100.0 32 ............................ TCATAGCCGCCTGACTCATCTCTGATATAAGG 517811 28 100.0 33 ............................ TACTGGTCATGGAAAACATACGACGATTATAAA 517750 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 GTGTGCCGTGATGTACGCGGCTTGATAG # Left flank : ATTCGCCCTGCTCCCATATCAACCGAACATGGGTACTACTCTTTTCACCGCAACCGATCGCATGAAAGAAACACGCCGGCATATGTTGCCAAAACAGAAGCGAAACTTATTAAGCGTGCAATGGAAGGAAAGAATAAAAGCTTAAAAAGTGCTGAGGATGTATTTAAGCGACGTAAAGACATGTTGGAAAATATTGCAAAGAAAGATAACGACAAAAATGTTATTCATATTCGTGCAACCAGCTCAACTCAAGATCGAGGCTTCTTCCTTTATATTGACTATAAAAAGCATGATGAGTATAAGACGAACACTCCCAATAATTACGGCATGTCGAGAGCACAAGATGCTATTGCCCTACCTGTTATCTTAGACCCTTTTATTTAAGGTGTTTATAAGTCATTGATTTTAAATATTGAAAGCATGATGCAAAAAATAATGGGTAAAATGACATATTTAGGATAAGGTATTGAAAATATAGTGAATTTAATAAAATACGTTCA # Right flank : TTTATTATCGGGGCATTGGACAGCCATATCTTTCGACGCGATGTGAATAGATCCCCTATCGCTCTCACGAGAGCATTCACTATAGTGACATAACAATAACCAACCCTGACAATAGCGCTAATTCTTATCTGTTTTCTAAAGGGAAGATTATGGGTGTCCTATGTTAAAGTGTAAACACAGCCTAAAACGTAGTAAGAACCAGTAAAAAGGCCTGACTCCGATTGAATATCGAAATCAGGCCTTAAGCCACTAAACCGAAATGTCCAAGAATTAGGAATTACTTATTAAATCGGCTTCTCAATAATATGGTCTTAACTTAAATCAACATTTTGGGTACCGAAGAACCAAGTCATTGCAAATCCCATAAGATATGAAATCAGCAAGCCAATTGTAAATATTGCCATACCCGCAAAAATACCTGAGCTTGATGTCATTAATGGCAAGGCAACAATACCTGATGGGCCAAATACCGTATTTAAACCAATTGGTAACCCCATGTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGTGATGTACGCGGCTTGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 526948-527216 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUZI01000001.1 Photobacterium piscicola strain NCCB 100098T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 526948 29 100.0 31 ............................. TACAAGCCAAGTTCGACAGCACTAAATGATT 527008 29 100.0 31 ............................. CAAAGTGAGCGGTAGTTATTTAATTAAAATG 527068 29 100.0 31 ............................. AGTTGTTTTTTACGAGTTCATCGAAATTTGA 527128 29 100.0 31 ............................. TATGAGTTAGAAGTTATGTATGAATCTAATG 527188 29 93.1 0 C.......................A.... | ========== ====== ====== ====== ============================= =============================== ================== 5 29 98.6 31 AGTGTGCCGTGATGTACGCGGCTTGATAG # Left flank : TCAACTTACACTGATGCGTCATGGAAAATACCTCGTGACTCCTTGCTTCGTGATACCATTTTATTGGATAAATATGATCTTATTGAAAATTCAAAGGGCGAGATGGAACTTTGGATTGATGACCCCCATTGGCGAAATGGCTTAACTGATGATCGCCGATCTGTTAAATCAGTTGAGTCACTTTGTTTTCCTCATACAGCAGAGCGGTTTCCGTCGAAGAAATTTGATTTACAGAAGAATATGCTTAGCATTATAGATAATGTTCTTTCCGATGAATTTCAACCTGAGAATGTCATTGTAGCATTGGAGGCTGTTCGGTCCTTGGCACTCATGACAGGATTAATTTGTATTGATGAATGAGATTGAATTTATACCCTTATTTTTTAGCATTTGTAACCCATTGATTTATTGAAGATAAAAAGCAAAGGTTTTAAAAAGGGGTAAAGTTGATATTTTCAGGTAACATATTGAAAAAATGAAGAATATTAGAAGAAACCTTC # Right flank : GTTTAAATCTGAATATCGCGGGTAAGGGGAAACGACTACCTTCGTGAATTAAATGCGTCGACAGTAATAAACAATAAAAAAGCTAACATTTGTTGTTAGCTTTTTAGATTTACACCATTCAAAGTTTACTTAAAAATCGGCATCGACCTCAAACACCATAGGTTCGCCAGTGACAGGGTGGTTTAGGCCAAGGTATTGTGCATGTAGATGTAAGCGGTTTGCTTTTTGACCGTATAAATCATCACCGACAATCGGCATGTTCATACCGTTTTGGTGGGCTGAGTGAATGCGTAGTTGGTGAGTACGGCCTGTTTTAGGGTAATAATAGACCTTAGTTTTACCGTCTTTACGTTCGAGAACCTGCCATTTTGTGAGTGCAGGTTTACCATGTTCATAACAGACTAATTGGCGTGGACGATCGTCTAAATCAACCCGCATTGGTAAGTTAATCTCACCGTGATCTTGCTCGGCAATACCATCTAATAATGCCACGTAACGTT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTGCCGTGATGTACGCGGCTTGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 588913-588166 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUZI01000001.1 Photobacterium piscicola strain NCCB 100098T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 588912 28 100.0 32 ............................ CTGGTTTGCTTCCACTGTAATTTCAGGCCGAC 588852 28 100.0 32 ............................ TAATCCAGCTCCGAATCGTGAATTATTAGCTT 588792 28 100.0 32 ............................ CGGCGGTCAACAGTTGCCGATCAATGCTGCTG 588732 28 100.0 32 ............................ GCCTTTCCTGCTATTTGGTTTTTGAAGCCTTC 588672 28 100.0 32 ............................ CGTGTTTATTCGCGGGCTCTTTCTGCACACCT 588612 28 100.0 32 ............................ ACCGCTTAATACCACCGTCATATTGGCTTGGG 588552 28 100.0 32 ............................ AGATTCTATAAATGCTCTACCAGATGATAGAT 588492 28 100.0 32 ............................ GTATGAATTGGGGAATGTATCACATAAAAAAG 588432 28 100.0 32 ............................ AATGACAAAGCCGAGCTTAATTTGTGGCTAGA 588372 28 100.0 32 ............................ ATACGTATTTTGCACACTGATAATCATCACCG 588312 28 100.0 32 ............................ ATTTTCCAATAGCGCCGCTCGTCTCTAAAATC 588252 28 92.9 32 .C............C............. ATCATGGCATTGACAGAAGTTAAGCTTAGGTT 588192 27 85.7 0 ....................T..T-..T | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAACTTCATTAGCTGAGAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCAGCTTGAGTAATCGATGTACCAGTTCCAAGCATAATGGCGGTCGTGTTTGCTATGGGGATATTCCAATATAAAGATTGCTTACCTTCGTCAGTGACATATTCAACCCGTCCACCATTCACTAACACGCGACAATGCTGTAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACAATAAAAAAACGAATTATATACATAATGCGTATAATTCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGATAACAACTCATACTATATAAAACAACGACTTAAAATATCAGTTTAAATAAGGGTATTTGGTGGGAATTTACTGTTTAGCTTCTATAAGCAATCACTTATACTAATTAAGCTTCA # Right flank : TACTTACTGCAGCCATTGCTTCTTTGATTTCATCTGAGTTATAACCCTTTGATGACAAATACGCATAGGCTTTACTTTTGTCTTTAAAATTCGATAAATCAAACCTTTTTTTTGCTAGTACAAGTTGGCAATTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGTTTCATTTTAAGCTCTTGCTTAATCACTGTTTTTCCTTTGAGCTTTCTCACCAATTTCAATACTTCGGTTTCAAGATCCGCATTCATGCCTTTGATTTTAGCTTTAGTTAATAGCGTATCGGCAGCATCATGTTCAGCAATCGCTCTTGAAATATCTTGAAAACTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATCTCAATTAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 597383-597900 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUZI01000001.1 Photobacterium piscicola strain NCCB 100098T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 597383 28 78.6 30 .....T..TT......T..A.....G.. TATACAAAATATCATGTATTGTACTACTAT G [597407] 597442 28 89.3 14 ...T....T.....A............. TAACAACACATCTT Deletion [597484] 597484 28 71.4 17 ..GT.....T.C..A..C..T.G..... CTATTGACTCGATGTTT Deletion [597529] 597529 28 100.0 29 ............................ TTTACAGATGCCTAGACATGATAGGTTTT T [597556] 597587 28 82.1 32 A.A......T....A..C.......... AATTCAGAGCGCTGGCGTAGATAACCTCTAAT 597647 28 82.1 16 .A...........TAA.C.......... TTGAACCCAAGCTTTC Deletion [597691] 597691 28 92.9 34 ..............A.....T....... TGATGCGAACAATCAGGGGTTAGATTGCATTTAT 597753 28 89.3 31 ...........A.A...C.......... GAACTTGGCAGGTTTAACCATGATATCAATA A [597768] 597814 28 92.9 31 ...........C.....C.......... TTTACACCACAGATTTAGGTGCTTATTCTGG 597873 28 85.7 0 ...A.....T....A..C.......... | ========== ====== ====== ====== ============================ ================================== ================== 10 28 86.4 26 GTTCACTGCCGTACTGGTAGCTTAGAAA # Left flank : TAGGCGATACGTTACGCTTACATGGTTCTCAAGCTGCACTTGAAAAAATGATGGCTGATAGTTGGCTAAAAGGATTAAGAGATTATACCTGTGTTACTGCTATTACTGCGGTTCCGAGTAATACAAAAGGTTTTCAAACCGTAAAACGAGTACAAGCAAAAAGTGCTAACAATAAGCGTAAACGGTCGATTGCTAAAGGTTGGATCAGTGCAGATGAAGCGATTCATGCGATCCCTGACACCGCAGAGCGTAAGTTAACGTTGCCTTATATCCAAATGCAAAGCTTATCTAACCAGAACGTTATGCGGGTATTTATTGAGCATAGTAAGGTTGTAAGTGATGCAACGGATGGTGTATTTAATAGTTATGGATTAAGTGCTACGGCTACAATACCTGTATTTTAAGTTTGTTTTAATCGTAATCGCTGCGATAGGTTAGGTGACTATTTAATCTTTTTTTTTGATTTTTATTTAACTTAAACAATAGCTTATTGTAATTGA # Right flank : ATCAATATGCGCTTCTATAATTTACAGTGACCTTTAAACAGGAAATTATACGACACTAAATAGTATAAGGTTGAATGATGTTTTCTTACTCATTAAACGCTGCTTACTGATTATTCTCATGTTCAAACTCGACCCACGCTTTTTCCAATTCAATTAGGCTCGCTGCAATCTCACCGTGGCTTCTTTTTTGAATGATTAATTGTCTAACGTGTTTTTGCTGTATAAAAATATGCTGACGTTTATTATCTATAAAGTAATTTCGCAATCCTTTTGCCTGATCCATATACTGATACCCAATATAAAACGCTGTATATTAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATGGGCTGAATGGATAGTTCGTGCGTTTATTTGCTTATGGCGTATCAAGACTGAAACAGTTTATGCCATTATATAAAGGGGAAGGGATGTAACAAATTATACTAATTTTATATATTGGGTCGGCTAGAGAAGAAATACCCGCCATTA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:-1.5, 6:0.25, 7:-0.52, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACTGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //