Array 1 4155755-4154140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061768.1 Nocardioides sp. MC1495 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4155754 29 100.0 32 ............................. CACGCCCGGCTCTCGGTGTGGTCCCTGGGCCC 4155693 29 100.0 32 ............................. TACAAGAAGCAGCGCGGCACCATGCTCCAGTG 4155632 29 100.0 32 ............................. TACAAGAAGCAGCGCGGCACCATGCTCCAGTG 4155571 29 100.0 32 ............................. CACCCGCACCGAGCGCGACGAGGCCGCACAGA 4155510 29 100.0 32 ............................. GGTGCAGAAGATTGCACGTGGAGAGCTGGACC 4155449 29 100.0 32 ............................. GAAGAAGGACCGGGTCCGGCCTTCGGCGCGGG 4155388 29 100.0 32 ............................. GCCCCCCAGGAGCAGCCCGGCACCCACGCAGG 4155327 29 100.0 32 ............................. GTTGATGCCGTCAGCAGCGTTGACCTCAGTCG 4155266 29 100.0 32 ............................. GCTCCGTGCTGAAGGATCGGGTCGCCAGCCAC 4155205 29 100.0 32 ............................. TTACCCGAACCGGTTGGCCCGGTAACGAGCAC 4155144 29 100.0 32 ............................. GGCGGCGCGAGGTTGTAGGCCAGCATCGTTGC 4155083 29 100.0 32 ............................. CGGGTGCTCGGTGCGGACGTAAGCCTGCGCGC 4155022 29 96.6 32 ............................T GAGGTGCCCGAGCGGATGGGTTGGCGCGAGGC 4154961 29 100.0 32 ............................. CGAGCAGCGGTATGGATCTTGCCTCGCGCCTC 4154900 29 100.0 31 ............................. CATCCGCTCTACCACCTCAGGGGGAGCGGGG 4154840 29 100.0 32 ............................. ACCGTCGGCCCCGACACCGGCGCCGAGGCCGT 4154779 29 96.6 32 ............................A AGCAGAGCCAGCCGCACGACTCGACACCACGC 4154718 29 100.0 32 ............................. CACGGCCCCGCGCTGTCCCATCTCGCGCAGGA 4154657 29 100.0 32 ............................. CTCGCGCCCCTGCCGGACGGCATGGAGGACCT 4154596 29 100.0 32 ............................. GAACACGTGGTCGTCGGGGTCCGCTGCCTTGG 4154535 29 100.0 32 ............................. CTGACAAAAGACGAGAGCGGCCGTCCTGGCAG 4154474 29 100.0 32 ............................. CCACATGTCGGCGGTGTCGTCGTGGTGGTGGA 4154413 29 96.6 32 ..........A.................. TCGGTGGTGCTGGAGGTCGCGGTCTCGGCCTG G [4154391] 4154351 29 100.0 32 ............................. GTGGGAGTGCTCGAGCAGCGCGGCGTACGCCG 4154290 29 100.0 32 ............................. ATGGCCGACCGTGCCGCCCGCGCCTTCCGTGA 4154229 29 100.0 32 ............................. ATGAGCACTACTCCTGTGGTGGTCGGACTGAC 4154168 29 89.7 0 A..T........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.2 32 GTCCTCCCCGCTCACGCGGGGGTGCTTCC # Left flank : GCCGATGCGCAGCTCCTCGACGCGATGCGGCGTGAAGGGCTCGGCCGCAGCAAGGCGTACGGGTGCGGCCTCATCACCGCGCGCCCGGCGGTGCGGGACTGACCTGGACGCAAGCGATCTGATGCCGTGAGCTACGCGACGCTGATCTCCTCATCCCTGCCGGAGGGCATGCGCGGCGCGCTGAACAAGTGGTTCGTCGAGGTCCTGCCCGGCGTCTACGTCGGCACCGTCAGCAGAGGATCCGCGACGAAGTCTGGTCCGCCATCAGCGACTGGGTGCAGGACAGGGCGGATCCAGCCGTCTACGCGGCGATGATCGAGTCAGCCCCCACAGAGCAAGGGTTCGAGATCAGGACCGCCGGGGCCCACGCCTACGAGGTCGTGGACCTCCACGGGCTCCAGCTAGTGTCCCGGCACCACAAGGAGGGCGCCAGCAGGCTTTTACAGGGCCTTCCCGACCCGGCCTCGTGATGCCGAAACCATCATCGCAGGTCAGCAAGG # Right flank : AGAAGACGACCTCGTCCGCCACGGCGATTCTTCAGTTGGCGTGGTGTTCTCTGCCGTGCAGAGGGGCTTGCGAAGGTTTCTAGGGACGATCGGACCCCAGTTCGCCGGTGGTCTCGGGACCGTCCCTGTAGTCAGACAGGCGCGCGTCGCGATGCGACAGGTTGCTCCTTTCCAGTAGATCTTCGACCCGGTTACAGATGTCGACGGCCTCGGGTGATGGTACGAGCTGCGCAAGTCTCCAAACATTGAGGAGCACTTCGGCTGCCTCTTCTCGGCGGTCAGCTCGCATCCTGGGGCCACCCTCGCGCGCCGGATCCAGATACGTGCGGTAGTCCCCAGTTCCCTTGCAGATCGGGCAGGGGTCCTTCTTCTGGACGCGACGTTTCCGCCAGGTTTGAAGTAGCTGCTGGACCCCGTCGGACAGTTTGTCGCCGTCACTTGCATGCTCCTTGTCGTGAGCCCAGTCATTGGGCCCGACGTACCAGGCGCGCATGCCGACC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCTCACGCGGGGGTGCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //