Array 1 81296-81854 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUA01000014.1 Bacillus sp. AR13-1 AR13-1_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 81296 32 100.0 33 ................................ TTCAAAAAGGTAATCTATAGGATTTTTATAATC 81361 32 100.0 34 ................................ ATTAACATGATTTCAGTTGCGTTTATTGGGTTTA 81427 32 100.0 35 ................................ AAGAAACACGCAATGAAACGTGCAGCTAAATTACA 81494 32 100.0 34 ................................ TACACAGACAAGGAAGGCAACCCTACACGCCTTC 81560 32 100.0 33 ................................ AATTAATGATCAACTTTACGAACTGCAAAATAA 81625 32 100.0 34 ................................ TTCTTGTGCTTGTCCATCTGTGAAACCTTGTTGC 81691 32 100.0 35 ................................ TCAGAAGAACAAGCTGAGATGTTTGAAGAGTTCAT 81758 32 100.0 33 ................................ TAGAGAGTCAGGCTCAAGATAACAAAAACTTCG 81823 32 96.9 0 .............C.................. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.7 34 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : AATTGAAGAGAAGCAAATTAGTATTTTAAATCAAGAGACTCCTAATAGCATCGAGTTTTATATTGAAAAGATGAATACGTATAAAGAAAAGAATAATAAAAGTATACGTGAGTTAGCGAAAGAAATTGATATTTCGTATTCAACGCTTTCTAGGATGTTATCCGGTAAAAGGAAACGATTAAATGATGATACAAAGAATAAGCTTGATAAGTGGATAGAGAGACAAGAGGTAGTTAATTTATTGTAAATTATGACTTAATATATATAGGCTATTGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGCTCTTTAATTTTTTAGGTGCGAACGTATAGTACACATGAAATTCCTAGTACATTCGCACCTGGAATTCTCATAATTTATGATTGGAATTTATGATTTTTATACAAATTACTTTATAAAATAAAAATATTTGTATACTTTTGAATAGAATTACCGTATTTGTGTGTGATTTTGAACACAAATCGGG # Right flank : TATCACAAGATTGAGGAAGAAGGGGTTTTTAAGGTAATACTTTAACTTCAAAACAGTCTTCAGCTTATTAGATACTCAACTGGAAGTATCTATCTGCAGTATCTAACACACATGTTAAAAATATAAATTGGAGGGAGATTGAATGACCTACATTGCTCATATCCGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAATCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCGGGCATGCTCCATGATTTAGGTAAATATACCAATGAGTTTAGAGAGTACATATTGGAAGCAGTAAATAACCCTAATTCTTCATCTAAAAGAGGGAGTGTTGATCATTCAACTGCAGGTGGAAAATTGTTATATCAATTATTCCATACAGAAAATATCATTCCTTATAAAGGAATACTATCTGAGATAGTAGGAAATGCTATTATTTCTCACCATGGATACCTTCAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 90238-90927 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUA01000014.1 Bacillus sp. AR13-1 AR13-1_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 90238 32 100.0 32 ................................ TTATAACAATGCTTTAATCTTTGTTACTCAAA 90302 32 100.0 34 ................................ CCTGTTGGTCATGATTATATGATTATACGAAAAT 90368 32 100.0 32 ................................ ATGCAAGCAAGTTTATTACAAACTATTGGTAT 90432 32 100.0 34 ................................ TCTAATTCTGTTGTGAAATCCGCAAAGGAATCAT 90498 32 100.0 33 ................................ TTTCCATGCGCTGTATTTGATACGAATAACGGC TGC [90518] 90566 32 100.0 34 ................................ ATTTTAGCTTTAGTACGAATTGTATTACAGTTAG 90632 32 96.9 34 ........................G....... TACGTTACAAAGTCACCTATGAAAATGTAAAAAT 90698 32 87.5 34 ..............TA.....G.......G.. CTCCTGAGTTTACCTATCGGTACATACTGGACGA 90764 32 90.6 34 ............T........C..G....... GTTTATGCTATTCCTACGCTCCACAATTCTCATT 90830 32 87.5 34 A...........G......TA........... TTTTGTCATCACATCGTATTTACTGTACATGCTG 90896 32 93.8 0 ............G......T............ | ========== ====== ====== ====== ================================ ================================== ================== 11 32 96.0 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : AGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTGTTGGCGGTGCAGGACAAAAAAGACTGCGGAAAGTTTCAAAAGTATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAAGGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTTGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTTTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTGAACAGAATTAGCGTATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : TCTGTCAATTTCTTAACGAGGACTCGGAGCGTAAAATCACATCTCTTGTAGGATTGTGATTAGATTAAACAAATTGAGTTAAGAATAACTTTTGCAAACTTTTAGAATAAAAATGCTTTTAGAATGCTAAACAAATTATATCCAAATCGTTATACGAGAGATATGCTTACTTCCTTACGACCAATGAGATAAGCAAACGCTTATTTACATCAAATTAGATATGTAAAATTTTAGAAGCAAATTTTCAGTTTATAAAAGGAGGTTAATAATGAACAATAATTTCATGATAAAAATTAAAAACTTAATATCAAGTAAATCCGAAGGAGAATTTTGGGATTTTAAACAAGAGTGGCATAGAGACAATGAGAGATTATTACATGATATTCTCTGTTTTGCAAATACAGTTCATGAAAAAGACTGCTATATAATAATTGGAGTATCAGATAATGGAGATATAATTGGGATAAATAATGAAAATAGAAGGGAACAGTCAAGTGTAC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 93020-93578 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUA01000014.1 Bacillus sp. AR13-1 AR13-1_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 93020 32 100.0 35 ................................ ATGTTAGTGACGATGAGTTACACAACTCAAAAAGC 93087 32 100.0 32 ................................ AAGGAGCTGGGCCTACAATACTAATAATCTTT 93151 32 100.0 34 ................................ TTATATAAGTAGTCCAAATAATAACAGGTTTAAG 93217 32 100.0 34 ................................ TATCCCTCTAAAGAAATTCAATGTATCTATTACC 93283 32 100.0 34 ................................ TCAAAACATGGTTTTTCGTGACATGTTAAGGCAG 93349 32 100.0 34 ................................ ATTGGAAGTGTTGAAGAAACAGAAAGAGAAATTG 93415 32 100.0 34 ................................ ATCTGACCAACCAGGAGGTTTGCCATTTGAGAAA 93481 32 100.0 34 ................................ TGAAGTTGTGATTTTGGATGGTGACGGCAATACA 93547 32 87.5 0 .......................A...A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 9 32 98.6 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAATTGGCCAAATAAACAAAACATACACCGAAAACAACAAGACACAGGTCCTTATCGATATAAAGACCTTGATTATTCTTAATAAGTAGGACTCCTTTGGCGAAAATTTTCGAAAACATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATTAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAAGGTCCATTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTCTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTAAACAGAATTAACGGATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : CTGATAAGATGCTTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGAGGACCTGCTTCAATTCATACAGCAACTAGTGTTGATCCAATTGACATTACTAGTATGCAGAGTACGAAAAGTGTAAATTCTGAGCCTGAGAAGGAGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCAGCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAAAAGATTAAAAATGCACTAGTTACATTGTTTGAAAATAATGCGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTATACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAACAATTGATGACTATAACATTTTGGTAAATGAATTAGATAGCTTAAAAGTTGTGATTA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 94164-94840 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNUA01000014.1 Bacillus sp. AR13-1 AR13-1_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 94164 32 90.6 34 ....T........A....A............. AAAAGATGTGTTATATTTTATGTAAGACTTGCAG 94230 32 96.9 35 ...........C.................... CAGGCTGTCGCTTAACGGTGTGGCCGGAGCGTTTT 94297 32 100.0 34 ................................ CGTCAAGTGCTGGAATCTGAACAGCATGACATGG 94363 32 96.9 35 ............A................... TGATTATAGCAAAAAAAGGGGACAGAATATAAGAA 94430 32 84.4 34 .C..T......A.......T.....A...... ATTGCTCATTCATCAAAAGTTTTCAAAATTACTT 94496 32 87.5 33 T........T..A........A.......... TTAAAGAATATCCGAAAAAAACCAATAATATTT 94561 32 90.6 35 .........T.C....A............... TCTTTGCAGGTTTGGGAAAAAGGAGATGTATTAAT 94628 32 87.5 33 .........T.C.A.....T............ CAGGATATTTATGGGCACACAGCAGCTATTAAA 94693 32 87.5 18 ..T........A.........C......G... ACAATGTACAACCAGTTT Deletion [94743] 94743 32 90.6 34 ...........CA.G................. AACAAGCCAATGGTGAACAAAAAGAAGTCTGTCA 94809 32 90.6 0 ......T...A...............C..... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 91.2 33 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : TTGACATTACTAGTATGCAGAGTACGAAAAGTGTAAATTCTGAGCCTGAGAAGGAGAAGGATAAAGGTTCAGATACGATGGGGATGAAGCAGCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAAAAGATTAAAAATGCACTAGTTACATTGTTTGAAAATAATGCGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGAGCATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTATACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAACAATTGATGACTATAACATTTTGGTAAATGAATTAGATAGCTTAAAAGTTGTGATTATTGATGGACTGTAATGAAGAAAACGTTAGAATGATTGAAGGAAAGCGTATTTATTAAAAAGCTAATCAACCATTTATTAAAGAAAA # Right flank : TACATAAATATTTCATCCATACCGGATTATCTTCAATTACATCCCTTATTGGTGCAAGGATTAAAATCTTAGTAGGTGAGAACGTATAGCACACATGAAATGTCTCGTACATTCGCACCTGAATTTTTATAATTTATGAGTAAAATTTATGATTTTCTATACAAATTTTTTTATCAAATAAAGAAATTGTATATTTTTGAACAGAATTAACGTATTTTTGTATGATTTTGAACAAAAATCGGTGTCGCATCTTTCATGGGTGCGTGGATTGAAATCACTTATCTTTTTAAATTCTCCTTATAATACTTGTCGCACCTCTTATAGTTGCGTGAATTGAAATCGCTAGTGCTAAACGTCTAAAGGAATTGTATGGGCGTCACACCTCTAGTAGGTGTTTGGATTGAAAGTGGTAAGACACTTGATAGTATTTTATTAAGCCTTAACGCATTACCCAAATACCTTTTGACTAACGTCCTTCACAATCTTGAGGAAGAAGGATT # Questionable array : NO Score: 6.41 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:-1.5, 6:0.25, 7:-0.10, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //