Array 1 306819-308241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRPF02000002.1 Helicobacter typhlonius strain MIT 98-6810 NODE_2_length_310103_cov_88.5843, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 306819 36 100.0 31 .................................... GTGATTTGGTCCCATTTTTGGTGCAAGACAA 306886 36 100.0 30 .................................... TTAGCGACAGCTGTCCCATCCTTATCTATG 306952 36 100.0 30 .................................... GCAAGTATCTCAAGAATATGTATGGTTTTT 307018 36 100.0 30 .................................... CTTGTTAAATTTCTTTCTCGATTTATGTGT 307084 36 100.0 30 .................................... TCACGGCAATACGCAATGTTCCTAAATACG 307150 36 100.0 30 .................................... TTGAACAAATACATCATATACTGATGTTCA 307216 36 100.0 30 .................................... TTATCCCTGTGTCAGCTGAATGTTTTCGTG 307282 36 100.0 29 .................................... GTTACTTATAGAGCCTATGATGAGTTTCA 307347 36 100.0 30 .................................... CTCTGGAGCAAATTATGTTACGCAGTGGAA 307413 36 100.0 30 .................................... GTTTGTGTTGCTCGTTATAAAAGAAAGGCT 307479 36 100.0 30 .................................... TTGCCAGTAGAATCAGTGTCATCAGTAGGG 307545 36 100.0 30 .................................... GTTCGTCCTCGCTTTGCATATTCGCAAGGT 307611 36 100.0 31 .................................... GGTTTGCAGAAAAAAGATTTTCAAAAGGTAA 307678 36 100.0 31 .................................... CTCATTGATATGCAGGGTTTAATCAAATCTG 307745 36 100.0 30 .................................... GTGTCAATGCCACGACTTTTATCGACAAAA 307811 36 100.0 30 .................................... TCCAGACAAAAGATGGTTTTATCGGAATGC 307877 36 100.0 31 .................................... TTTCAGCTCCAGAGCCTCAACAGGAAGTGAA 307944 36 100.0 30 .................................... TCTCCTCCCGATATGCTTACCGCAATTTAT 308010 36 100.0 29 .................................... CTGCTTCACAATCTTGCTCACTCACTTCA 308075 36 100.0 29 .................................... ATCCCGAATGTTGAAACAAAAAAGGTTGA 308140 36 100.0 30 .................................... TCTCTTTGATACGCTCTACCTGTGTTCGGG 308206 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 100.0 30 ATTTTACCATAAAAGAATTTAATAAGCGGCTAAAAC # Left flank : GTAAGAGTCTTATCAAAGATGGATTTATGATGTTGCAATATAGCGTATATATGAGAATCTGCAAAGGTGTAGCAAGTGCCAATAATTATTTAGATAAGGTGAGTTTGATTGTGCCTCCCAAAGGGCATATTAGGGCACTAATTCTTACCGAAAAGCAATTTGATAATATGCGATTATTGCTTGGCAAAAGAAGTGAGAATGAAAAAGCAAACGCACCAAGACAGCTTACGCTTTTTTAGTCTATTGTCAAGTTATAAGGACAAAGTTTCTAAAGACTTAATCGCTAAAATGTTTGAAAATACTTATTGGTAAAAAGATTTAAAGTAGATTCGGTTTTAAGGGATTGTAACCCTACGGAGACCGAAAACTCCTTATTTTAGCCGCTTATTAAATTCTATGTGGGGATTATATCTTAGATTTTCTTAAAAATCACTCATCTAAGATATTTTAAGCCTTTAAAGTCTTTCAAATACCGCAAAATACGATAATTGAGAAAGTAT # Right flank : CTAATACTTTGATATGTTGAGCATTAACAAGATTGCCATATCATTATTATGATTTCATACATTTGATACCAAAATAAAGGAGGAGCAATGAAAGCAAAAGTTATGAGTTTAGCACTGATGTTAGCCTTATCTAGCACGCTCTTTGCTACACCGCCGGTCCCTACAAAGCCACAGCCACATATCAAGGGCGTTTTACCAGAGGTTTTTAACAATGCGAGTTTTGATAAAAAAAGAGAGGCTTTAAAAGCAGATTTCAAGGAAAGGGAAGCCATTGATAAGAAAAGAGAGGAATTAAGAGGCAAAATCAAAGCACTAGAGCTAGAGAAAAAAATCCTAGAAATCAACTTGCAAGAGGCAAAGGCAACAAGAGATGATACTAAAATTAACGCGACTTTAGCTCAAATCGTGCAACAAGAAGCAAAGATTTCACAAGAAAAGGCTAAAGAAAAGCAAATTATCGCCGAAATGGAACAAAGCGCAATTAGTAAGATTAACAAGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATAAAAGAATTTAATAAGCGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //