Array 1 64597-63897 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMIE01000021.1 Escherichia coli strain MOD1-EC6385 MOD1-EC6385_21_length_73232_cov_24.9691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64596 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 64535 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 64474 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 64413 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64352 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64291 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64230 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64169 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 64108 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 64047 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 63986 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63925 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98-1407 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMIE01000139.1 Escherichia coli strain MOD1-EC6385 MOD1-EC6385_140_length_1602_cov_14.9764, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 159 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 220 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 281 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 342 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 403 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 464 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 525 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 586 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 647 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 708 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 769 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 830 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 891 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 952 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1013 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1074 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1135 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1196 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1257 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1318 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1379 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCTTTAAGAAATTTTAATATATTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //