Array 1 1929-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEJ01000020.1 Enterococcus sp. JM4C 4C_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1928 33 100.0 34 ................................. TGCCGTCCGATCATCAATGCTTTTATAGATTATC 1861 33 100.0 35 ................................. TACCACAATATATAGAAATGATTATTCCAGCAATT 1793 33 100.0 35 ................................. AGTGGAAAAGTTGTGATCCAACCCGAAGATAGCAA 1725 33 100.0 34 ................................. CGATTCCTGACTCAATCCACCTGCTCTTATCAGG 1658 33 100.0 34 ................................. AAAGTATAAGCCATCACCTAGTCGGCTTGTTGAT 1591 33 100.0 33 ................................. TTGCTGATATACAACTGTTGCGCTACACCCAAC 1525 33 100.0 34 ................................. TATTTTTTTCAACAAGTTATCAGGCAAACTTAAC 1458 33 100.0 36 ................................. AACTCTGTCTAATACAACCAATCGTCCGAATCTTAT 1389 33 100.0 37 ................................. TCCCAATTGTGCGTATCACCTTTAGGAATCGCTAAAG 1319 33 100.0 33 ................................. ATAGATATAATTGGTGCTTGAACACCATGGTTT 1253 33 100.0 33 ................................. TTTATTTTGATTGCATATTACTGAAAATAAAAC 1187 33 100.0 35 ................................. CGTTTCGTGAAGGCTATGAGATACCACCGCAAAAC 1119 33 100.0 34 ................................. GAATTATAAGATTCTTGAAAATAAAGTGAATCAA 1052 33 100.0 35 ................................. ACCCGGTAAGCCCTCAGTTCCTTTAAACTCAGCCC 984 33 100.0 33 ................................. TATATAGATGACTTTTTTCTCGTGTGTCTCTTG 918 33 100.0 36 ................................. ACTTCCGCCCTTTCAACCTAGCAAAAAACGAATGGG 849 33 100.0 34 ................................. CTTGGGGAAGTAAGGAACCATCTTATAATGACTT 782 33 100.0 34 ................................. AGCTACTTTAATCAAGGTGAAGAAGAATATGTAC 715 33 100.0 35 ................................. CGGGATGTTGATGCACTCTCCGATAAACCAACCTG 647 33 100.0 36 ................................. TAATTGCTAAATCAGATTCTTTGTAAGCAATACTCA 578 33 100.0 36 ................................. TTTGTAAGCCGGTCCCACGATAACTGGTAGATTTTC 509 33 100.0 33 ................................. TAGCTGATTTTTCGTTAAATTACTTTTGGCCAT 443 33 100.0 35 ................................. TGCTCCAATAACTCGTCGCATGAACGATCGTCAAT 375 33 100.0 34 ................................. AATTTACTGAAGAACAAGGTGTAACAGACTTAGA 308 33 100.0 34 ................................. TTCCAAATTCAAACTCTAAGTATTTAGCGCCTTG 241 33 100.0 34 ................................. ACTTAAAACTGTGCCACCAGGATCGACAGATTCG 174 33 100.0 34 ................................. CCAATCATTTGGATAGAATCTGGTGTTTTGATAC 107 33 90.9 0 ..........................A..G..C | C [76] ========== ====== ====== ====== ================================= ===================================== ================== 28 33 99.7 34 GTCTCACTCTTTAGGGAGTGAGTGGATTGAAAT # Left flank : CTATGATTTAGTCCTTTTGTCCCTAGTTTTGCTACATATTCCTGATACAGAAGGGATTTTAACACGATTAAATCAAGTACTAAATGCAGGCGGACAACTCATCTTAGTTGACTTTGTCAAAAATCGGCGTGTTTCTCATCCTAAAGTGCATAACGGATTTGAAGAGGTAGAAATTAAAGCAGCTGTAGAGAAGAGCGGCTTTGTCTTAACTAAATTTGAACCCTTTTACGAAGGAAAAGAAATATTTATGCGACAAGACGCTACACTCTTTATCGCTGTAGCAACGAAAAAATGATCTGTTGCTAAGGTGAAAATATGATGGAATACAAAAAAGTAAAGTGGTGCGGATGCCAAGTGAACATGAAATCACTGGGACATCCGCACCATTTTTTCTCAAATCAAGACATCTAAATCAGTCTTTTTCTAATGGTAATTTAATGATATACTGAGTGAAAGGCGGAAAAAGGAAACTATGTTCGCCAAAACGCGAATTATTCGCA # Right flank : CAGTTTTTTTGACAAATTTTATAAGGTGCAGAACTTCTTTCCGTATGCTATTCTGATTGTCCTTGACAATGAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTAGGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 40978-35391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEJ01000016.1 Enterococcus sp. JM4C 4C_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 40977 34 100.0 32 .................................. CCGTAGAGGCGTTGAATGCTGTAAATCTGGAA 40911 34 97.1 34 .................................T AATTTATTTTTGTATTCACTGGGTACATCAACTT 40843 34 97.1 34 .................................C TCGAAGAATTTGTCTCTTAAAGTGAATGCTTTAT 40775 34 97.1 33 .................................T ATGTATTACTGAGCTATCTATCAACTATCTATC 40708 34 100.0 32 .................................. TAGAGTAACGGATTGTACCTAGAACTTAGCAA 40642 34 97.1 33 .................................C CCGCCATTGGCAGTAAACGTCTTGCCGCTATCA 40575 34 100.0 34 .................................. TGTTCAAGATTATTTTGTTTTAGGTAATCAACGT 40507 34 97.1 34 .................................T AATGACGAAGAACGTTTAAAAGCTAAATCTGCTT 40439 34 97.1 33 .................................G TAATATGCATCGAATACAATTTGCTCGCCGTTT 40372 34 100.0 34 .................................. CTAATAGTTATTGGAAAAGGAATATTGAGGTCTA 40304 34 97.1 35 .................................T CCATACCTCGGCAAAACGGTAAAAACGAAGTGGTG 40235 34 97.1 33 .................................T TGGATTATCCCTGATGGTGTATCACACGCTGTG 40168 34 97.1 34 .................................T CCGTAAGGCACCCTGTAGGAATACAACTGTTTTG 40100 34 97.1 33 .................................C ACGTCTGGTTGTTCCTTGACAAACACAAATTGT 40033 34 100.0 34 .................................. TTGTTGGTCACCTCAGAACGGTAAATCGTCGTCG 39965 34 97.1 33 .................................T CACGTGTTATCGAAGCAGGTGAATAATCATGAA 39898 34 97.1 34 .................................C TTTAAAACAGCAACTAGCGCTTCGCCTTGTTTAT 39830 34 97.1 35 .................................T GAGGGTGATATCATCCGATTTGAAGGCTCAACTGG 39761 34 97.1 32 .................................G ATTGAGGACGTTTCCGAGTCCTTGCAATCGTT 39695 34 100.0 34 .................................. CCCTCTTTCCTTTTGGTTTTTGTTGTTAAACAAG 39627 34 97.1 35 .................................T TTTAGTAGCTTACCTCTCATGCCGAATAGGGTTTC 39558 34 97.1 34 .................................C GTACAGCGATACATGAATTGACTCACAGACAAGA 39490 34 97.1 34 .................................T GTGAGCATGGTAGCGCTAGAACATACTTTAGAGT 39422 34 97.1 33 .................................T TCTACCTTTTCAACTTTCTTCTTGGCCATTATA 39355 34 100.0 35 .................................. AGGTACTTTGAAAATCAATGGAAAAACCGTCAATC 39286 34 100.0 33 .................................. ATCAAATCGTCATTTTCATCAACTCTGAATACT 39219 34 97.1 32 .................................G ACTTGGCCAGTCTTTTCTAGCCACAATTGATA 39153 34 100.0 33 .................................. AATAGTGCAGTGTATAATTCTGAAAAGCTCTGT 39086 34 97.1 33 .................................T TATCTTTGCCATCAAAGTTATGTTTGTTGTCCT 39019 34 97.1 35 .................................T CAAATTTAATGTGCCAAATTTCTTGGTTCGAACTC 38950 34 97.1 35 .................................C TACAAATATCGATATACCTAACCTTTTTGGCTACC 38881 34 100.0 34 .................................. ATTGTCACATTATTCCATCCTTTGGCAATATCCC 38813 34 97.1 34 .................................T ATGCGCTGTATGTAGGATTTTCAATCCTTCTTCT 38745 34 97.1 33 A................................. ATACTTTGACCATAACTACCTCGGATGTTTTAA 38678 34 100.0 34 .................................. CCAATCATATTTTGAATTTTTTCTGATAACATGT 38610 34 100.0 35 .................................. GTTGAAGTGTGTAGATACAAGTTATTGAATACTGT 38541 34 97.1 35 .................................T CCCATGATTTCAATTGCAGCAGAAGCAAGTTCATG 38472 34 97.1 33 .................................G TTGCCGCGGTGTCTGCTGCCTGTGCCACCATGT 38405 34 100.0 33 .................................. ATTTACCTGTATGAGAGCGCCATTCACGAACGT 38338 34 97.1 33 .................................G TCAGCTGTATTAGGACCATTCGGAACGATAATT 38271 34 97.1 35 .................................T TGGTATTTCCCTTTAGCCACGATCTCACCTCCGTT 38202 34 100.0 34 .................................. ACTGTTTCGTTCGGCAAGAGAAACTCTTTAATAT 38134 34 97.1 34 .................................T TGATATTTTTTTAATACGGCATCTTGAACTACTC 38066 34 100.0 34 .................................. GCTGTAATCATAACGCTCTACTCCTTTTCAATAT 37998 34 97.1 34 .................................T GTATCTGAGGATAATGAAGATACCCAAGCTTTAG 37930 34 97.1 35 .................................G GCTAGACAAATAGCACGCCCGTTGCTTGATAACAT 37861 34 100.0 33 .................................. GTTACGTGCATGTATATATTCATGGTCGTCTGT 37794 34 100.0 34 .................................. CGAATTGCCATTTGCTTAGAATGTACTCATACAT 37726 34 97.1 35 .................................C AATATCAATCTTGAATTTACGTTTTACCGCTCCTG 37657 34 100.0 34 .................................. AAAGATAATACACCTTCTTCTACTACTGCATAGC 37589 34 100.0 32 .................................. AATTTGCACTAGCATTGACATTGTTGTACGAT 37523 34 97.1 36 .................................T AGCTGAGATGGGCGTGCCGTTAAAAGCCATTATGGA 37453 34 100.0 36 .................................. TACAAGAGTGCATGAACTAGCTCGTGTCTAAGGACT 37383 34 97.1 33 .................................T CAAATAGATAGGGCGTATAGTTTCAGATTCTAA 37316 34 97.1 34 .................................T TACAGCACTATCCCGACTATCGCGCCGTACTAAT 37248 34 100.0 33 .................................. AGAAATTGCTGACGAATTGGGCTACAGCTATCA 37181 34 94.1 33 .................A...............C CGTCGATTTTTAAAACGATACTTGTCGGCAATT 37114 34 100.0 34 .................................. TCTCAGATGATGTGATATTGTTCAGTCGCTCGTC 37046 34 97.1 31 .................................G TAAAATCAGTTTTTCGTGTAGGTTTATCTGC 36981 34 100.0 34 .................................. ATCTGTTTAATACGATCAATAGGCTTCCGATTTT 36913 34 97.1 36 .................................T TAAAGCCGGAATTACGAGAAGTATTAGAATTGCTCT 36843 34 97.1 32 .................................G TACTCGATATTTTGCAAGATGCCGTAGTACGC 36777 34 97.1 36 .................................C CCTTCTACTAATGAATTTGAGGGCTGGAAAACAAAG 36707 34 100.0 34 .................................. CAGGGGACCACTTGAGGGTGTGAGCCGAACACTT 36639 34 97.1 32 .................................T CTAATTTCATTTGAAGCAAGATTTGTATTAAC 36573 34 97.1 35 .................................G AGGATGAAGAGTAGCAAAAAAGCACAAGCCTTTTG 36504 34 97.1 32 .................................C GGCATTCACGCAGATCCATCGCCGAATTGTAT 36438 34 97.1 36 .................................G TACTGGAAGGAACTTTGAAGAATTTCTGCTTGAAAC 36368 34 97.1 32 .................................C GGATGATGCGACAGAAGAAGACATAGAAGAAG 36302 34 97.1 32 .................................G CTACTTACTTGTGGGTTAATAATCGGTGTCTT 36236 34 97.1 34 .................................T TATGCTAGCCTTCATCCTTTTTTATGTTTTGGGC 36168 34 97.1 34 .................................G ATAAAGGGCTTTGCTTTTTCATCTCCAGAATCAT 36100 34 97.1 33 .................................T AAAAACAATTCTACTTGTTCCGCAGAATAGTAT 36033 34 100.0 35 .................................. AGCGGGAAAGTTACAAGAGACAACCACACATTAGA 35964 34 97.1 33 .................................T AATGTAAAAGTCATTATCGGCTCATTTGTTTCG 35897 34 100.0 33 .................................. TACTCTGCCTTAGCATTCTTTTCTTTGATAGCC 35830 34 97.1 34 .................................T TCCTTATATTCTTCTATCTGTTCTTTTGTCCATA 35762 34 100.0 34 .................................. ATTTTAATCCCGTAGTAGTAGATAGCACCAAAGG 35694 34 97.1 33 .................................T TGTTTTTCAAATGGCTTAGCACTTTCATGTCCG 35627 34 97.1 34 .................................T AGTCTTCAAATCAGCATAACTTGTGGATGTTACC 35559 34 100.0 33 .................................. TCAGCGCCTAATAACCATTCAAGATCAGTTAGT 35492 34 100.0 34 .................................. GGATCGTTGTAATCAATGCCTTCAGGTGTTTCGG 35424 34 97.1 0 .................................G | ========== ====== ====== ====== ================================== ==================================== ================== 83 34 98.1 34 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : TTGGATGGGTATCCGCCATTTTTATGGAAATAGGAGAAATTAAATGCTAGTGTTGATTACGTATGATGTAGCTACCAGTTCTGAAAAAGGCACTCGACGGCTCAGAAAAGTAGCCAAAAAGTGTCAAGATTATGGTGTTAGGGTTCAAAACTCCGTTTTTGAGTGTATTGTAGATGCAACAGAACTAGTGAGACTAAAGAAAGAATTAATTGAATTAATTGATGAAGAAAAGGATAGTTTGCGAATTTATCGTTTGGGTAATAACTATAAAACGAAAGTAGAGCATATCGGTGCAAAAGAAGCAATCAAGGTAGAAGAGCCACTGATATTCTAAAATTTGTGGTGCGGATGTGAAGTGCACATGAAAACACCGGGGCATCCGCACCGGTTTTTGATCATACTTAGACTAGAAAGCAACTTTTTCTAATCAAATATTAATGTTTTAAGGTGATTTTGCTGGATATTCGAAAGTACATTCGTGTTTTTTAGCAAAAATCACG # Right flank : TGTATGATATATCTGCTAGCACTATAAACTTTTTTCGTCTACTACTAAAACTCAGTGACTGCTGCTTAAAAGAATTAAAGTCGCATGAAATAATCATTTCTATACAAATGATCTGCAAGGTCTGTAACTGAGAAAAAATAATATTTACGATGACAGTTCTGAATTCAGGATCTGTCCTATTTTTTTGTGAAAAAACTATAGTTTGTTCTGAGTTACCTATATTTTGTTTATTCTTATTATCGATTGAAAGCGCTAAACTATGGGTGTAAGTTTTTTAGCTTTATAGAAAGGGGTTTGATGATGAATAAGAAAAAGGGTATCGGGCGTTTTCTTAGTAATGTCTGGCGGTTTAAAGCACTTATTTTTATGGCGATACCAGGAATGATTTGGATGATTTTCTTCTTCTATATTCCAGTATTCGCGAATGTGGTGGCATTTAAGAATTTCCACATTTCACCAGATGGATTTTTAGCAAGTTTAAGAGAGAGCCCTTGGGTTGG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 80354-79913 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAEJ01000009.1 Enterococcus sp. JM4C 4C_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 80353 33 100.0 35 ................................. CTGGACGGAACCTATAAAAACGATGAACGTCTAGA 80285 33 100.0 35 ................................. AAATATGAAAACTGGTAATGAAAATAAGCAGTATC 80217 33 100.0 32 ................................. CCGGCGACGCGTCAAGCTCTTCCGCAATTTTG 80152 33 100.0 36 ................................. TGACAACACTCCTTTACTTTGTCCAGTCCCTTTATC 80083 33 100.0 36 ................................. AGAGTGGATATAGGGACGTCATGGGGAGGAGCAAAC 80014 33 100.0 36 ................................. CAACAACGAGAACAAGGCTTAAGCAATTGGGGATAC 79945 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 100.0 35 GTCTCACTCTTTAGGGAGTGAGTGGATTGAAAT # Left flank : TTTTGATTGATAATAATAGGACTGACGTGATAGACCTAATATTCTGCACATCGCTGATATAGGGTAAAGATGCTTATTCGCATCGATTACTTGTCTCTTCGTCCGAATATCAGCGCTGCTTGCTTTAAAATATCATTTTCCATTTCTAATTGCTGGTTTCTTTTACGTAGTTCTAACAATTCTTTTTGTTCAGGCGTAAGATTATCTTTTTCTTTGAATGAACCACTCGTTTTAGATTGCTTTACCCATTTGTCAAATGCTGAAGCCGTTAGTTCATATTCTCGAATGATTTCTACACGTGGCTTTCCAGCTAAGTAAAGATTGACGATTTGTTGCTTGAATTCTTGTGAAAAAGTTCTTCGTGTTCTCTTAGACATAAAAATTCCTCCTGGTATGTTTTCTTCTAGTCTACACACCTTAATTTTTCTGTCTAGTTAATTGTAGCCTATCCAGAGTGGATTGAAATATAGTGTGTAAGTACTCCTCTGTGCTCTAACTCG # Right flank : GGTAGTGAAGAGAAAGTAATTGAAGAAGCCTACGTCTCACTCTTCAGTGAGTGAGTGCCGGGCCACCTGGATATGATGATGGTACCTTAGCGCTAAAAGTGTTGTTGAATGAGCGTATGGAGAAGCTAATTATTCAAAGTTTAGGGATTGATTGCGGCGTGCTTATTTATCAGTTGGGCGTACCAAATCTTGTGGAGTATTTCTGTCTGTTGCCAGATTTTTCTGGACGTGGTGTTGGCAGTACTGCTTGGCAACTATTTGAGCAAGGACAAACGGGGATTTGGCGTCTGGAAACACCGGATTATTCGAAAAGAAATCATCATTTTTATCAAAAAAGAGTATAGAGGAAAACCAAAACCGAGTCGTGTGGAGTGTAAGCTCCCAAGGCTTTTTTTTATGCGCACCATTTTCCAAGTAAAGATGTGCGGTAGTGGCAATCTGATATTCTGTTAACGGTAACATTGGATTATTTATTGATGAGGGAATCGCTTTCGTCTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTAGGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //