Array 1 1747354-1743839 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009364.1 Yersinia frederiksenii Y225 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 1747353 28 100.0 32 ............................ ATTTAGAGGAGTTTGTAAGGCAGTTTAAATGG 1747293 28 100.0 32 ............................ ACTTAGCGTGGAGGTAATCAACCGTGAGTTTC 1747233 28 100.0 32 ............................ GGCATCCGTTCAATGAACGCCAGTTTTGCGGT 1747173 28 100.0 32 ............................ TGAATTTTCCAATAGCTATCTAGCCATGCTGA 1747113 28 100.0 32 ............................ TCGCAGAGGTGGCGGTATTGCTTCTTGGATAG 1747053 28 100.0 32 ............................ TGCCACTTAACCGGTGGCAGCAATAAGACCAC 1746993 28 100.0 32 ............................ CAGCCAGTGTGAGTATTCTTCGCTGGCCAATG 1746933 28 100.0 33 ............................ TGTTGGCCCACTCAATTGCAAGCCGTGATTCAT 1746872 28 100.0 32 ............................ ATTTCATGAGATACGAAGTTTAGCTTCACGAC 1746812 28 100.0 32 ............................ AAGATAGAGGTTAAGCGTGCCAGATTATCACT 1746752 28 100.0 32 ............................ GCACAAGGTGTGCTACTGCAAGGTCAGGCTGA 1746692 28 100.0 32 ............................ TTTCCCGCCGCACGGCTTACACAGCAACCGGA 1746632 28 100.0 32 ............................ AAGAAATTTTAGCAACCGGGTTCCTGACGTCA 1746572 28 100.0 32 ............................ CCGATTTATTAGTGCTAATCAGCGGTGAAATA 1746512 28 100.0 32 ............................ TTTATGCGGCTCGTTGACGAGTGCAGACCTGC 1746452 28 100.0 33 ............................ CGTTAACGTTCCGCCAGTTAGCGACAATTTAGT 1746391 28 100.0 32 ............................ ATGGTGGCGCGCCATACATGATGGTGGGTGCG 1746331 28 100.0 32 ............................ TTGAAACGGTTGAGCCATTGCAGCGGCGTAAA 1746271 28 100.0 32 ............................ AAATAAAAGAATCAAACCTCTGGTGGTTAAAT 1746211 28 100.0 32 ............................ AGCGGTCAATTCGTTTGTGTTGGCATCATGAT 1746151 28 100.0 32 ............................ ATCGACCTGATCCAGTTTACGCACCTTGACTT 1746091 28 100.0 32 ............................ AATGGCTGTGGAGCTTACTGACATCGCGTACT 1746031 28 100.0 32 ............................ CCTCCGCTAATCGAATTGTGCATGAGCCTCCG 1745971 28 100.0 32 ............................ GAACGGGCATGCGTCAATTTTCACATAGAAAT 1745911 28 100.0 32 ............................ AACACTGGCGACCGGTCAGCGGCAACCAACAC 1745851 28 100.0 33 ............................ CTCCAGACCTCGGCATTTAAGGAATGACTATGA 1745790 28 100.0 32 ............................ ACGCTCACCACGCAAGGTGTAAATTAAGCGTA 1745730 28 96.4 32 ...........T................ ATCATGCGGCCACGTACCTGCTGCCACATAAA 1745670 28 96.4 31 ...........T................ AACAATCCAGAGCAGCTTCATATAAGTCTGT 1745611 28 96.4 32 ...........T................ AATGGCTGTGGAGCTTACTGACATCGCGTAAC 1745551 28 100.0 32 ............................ CCTTAACTATGTGGTTAATAACTCTAATATTT 1745491 28 100.0 32 ............................ AGCAAATAGCATGATTAGAAATCTGTTTATTT 1745431 28 100.0 32 ............................ AATGGTTCCAGCAGCAGTGACACGATATGTAT 1745371 28 100.0 32 ............................ AAGCCGGTAAACTCAGGAACCAGTACGCTTGC 1745311 28 100.0 32 ............................ AAAGCATGAAGAGTCAGAACCGGGCAGAAATT 1745251 28 96.4 32 ..........T................. AAATACCTTGGCATGAGCCGCAACGCCGGGCA 1745191 28 100.0 32 ............................ AAATATAAAAATGGAAGAACCAGAAACCAAAA 1745131 28 100.0 32 ............................ TTGCTCTGACAAGATTGCGCGGCCCGAATCAA 1745071 28 100.0 32 ............................ ATTCCAGAAGATGGATGATGGCCGATACCAGA 1745011 28 100.0 32 ............................ CAACGCAAAAGCCGCTGGCACTGATGGAGTAC 1744951 28 100.0 32 ............................ TATGCGGTCTGCGTAGCCGTCGAACTGATTAT 1744891 28 100.0 32 ............................ GTAGCGCCAGTAATACCCCACGCATAATGCGC 1744831 28 100.0 32 ............................ GGAAGATGGCAGAAAGAATATCCATTCACCCT 1744771 28 100.0 32 ............................ TAATGGCATGAATACGACACCGAGCACCATTA 1744711 28 100.0 32 ............................ ATAACGGCGGAAAGTGCTGTCCGGGGAGTAAC 1744651 28 100.0 32 ............................ GTGAGTTTCAGCTCTGCAACAGTGAACTGCTC 1744591 28 100.0 32 ............................ CACTCGATTGAAAAGATTTACTAGCGACGAGA 1744531 28 100.0 32 ............................ AGCAATAGTGCGGGCAGTTGCCAGTTTTGTCG 1744471 28 100.0 32 ............................ AGTCAGCATGAGCAGGCGCACAAGCTTCGCCA 1744411 28 100.0 32 ............................ ATCTTGGTACTGGCGCTGAGTTCATGTTTTAC 1744351 28 96.4 32 ...........T................ ATAATTGTCTCCGTTGGTTGGCATTATCACAG 1744291 28 96.4 32 ...........T................ AGAAAGGCGGCGTTCTTTTTTATGTTGTGGTT 1744231 28 96.4 32 ...........T................ GCTTAGTGCCATTAGCGATATCAGCACGAAGG 1744171 28 96.4 32 ...........T................ AGTACGCATCCTTTGTGCTCGAGAGCTGCAAA 1744111 28 96.4 32 ...........T................ GTAACGGCTAAATCTGCAACTCTATCTATTTC 1744051 28 100.0 32 ............................ CGAAATAGCGTGCAGAACCGTCCCAGCCCGAG 1743991 28 100.0 36 ............................ AGCAATAGTGCGGGCAACCTAAACCGTAATCCTCAA 1743927 28 96.4 32 ..............C............. AATGGCAAATTAGATGCAAGTCGGGCGTTAGC 1743867 28 100.0 0 ............................ | T [1743844] ========== ====== ====== ====== ============================ ==================================== ================== 59 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGATTCAATATCGGGTCGTGCGCCGTGTGCAGGTGAAAAGTAATGTGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGCTGACGGAAGAAGAGGCACTATTGCGGATCCCTGATAATCGCGAGCAGCAGTGTAATTTGCCTTTTTTGCGCTTAAAAAGCGTATCCAGCGCGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGGAAACTCCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTACCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTACTCGTGTTTCATTACT # Right flank : TCTATCCGACTTCTTATTTCTCCTTTCTCGCTTCATACCTCCAAAGAGGTATATGTTTGATTTTATGCAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATATTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCGCACTGGGTAAATCTGTCATGGGTATCACTGAGTGTCTTACATTCCGGTGCGGGTTTAAAAATAAAAAAATGACTGTCTGGTGCAAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTATTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAACGATAAGTTCGCGCAGCAGCATGCGGATCAGTTCACCTCTTGGTTGAAAACCAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1757057-1756249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009364.1 Yersinia frederiksenii Y225 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1757056 28 100.0 32 ............................ TTCATCATTAGAGAAATCAGCAAGACGGGCCA 1756996 28 100.0 32 ............................ TCTACTTAATAACGTGATAGCAATCTTCACGA 1756936 28 100.0 32 ............................ GCTTAGTTCACCGATTGAATGGATGCGACAGG 1756876 28 100.0 32 ............................ TTCGACTGATTGCTGGAATGCTTCGGCGGGGA 1756816 28 100.0 32 ............................ ATAATGTCATGACAGTGCTGGGGAGTGAGTCG 1756756 28 100.0 32 ............................ AAATGCGGCGCATAGATACCCACGACTTTCTG 1756696 28 100.0 31 ............................ ATGAAGAACTGCTTTCCTTTGAAGAGAATGG 1756637 28 100.0 32 ............................ TGATGATATCTGCCTGCTAACGGTTAACTACA 1756577 28 100.0 32 ............................ ATCACGACAGTAACCGGTGAAAGGAATGTAGC 1756517 28 100.0 33 ............................ AAGTCTACCGCGTCATATTTGCTTTCGTTATAA 1756456 28 100.0 32 ............................ GTCGATTGAAATCGATTCACGAACTACGAACA 1756396 28 100.0 32 ............................ TGCTTTGTGACCCCCTGATATCCTTCGTTCCG 1756336 28 96.4 32 .C.......................... TCTAGTGATTGATGATTGTTTCCCCGAGTCTC 1756276 28 75.0 0 ....................TAGCACC. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGCTTTTTGGGCGATTAAACACGAACAAGCTTTACAAGCGGCGGAGCTGTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTCTCCCGCTGATTATCCTTGCTTAATCTCCTGAAGTACCTCAATTTTATCGGTCATATTTATTCTTTCTGACATAACAAAACTAGCAAAGCCCGCCCACAAAATAGTGAACTATAAGTTTTTCAAACTCTCTGTTGTTCGTCACATCATCCGCAGCAGAAAAAGGCTTAATAACATTTTGGCTAAACCTCATTTTAAACCCTTTTTTTAACGTACTTTTTAACTTATTGATTTTATATAAAAACCCCCAAGATTTTAAAAAATCATTTTTTATTACTACGGTCTAATGCGCTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGACCCCAAACACATATTGTTACTTGCAGTCGGGTTATGACTATTTTCTATTACCGACTTTGCCAGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGAAGCGCCCGCTGACTGACAAGATACAATTAACCCGTTAGAAATATTTGGGCGTTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATTTGAAAACAATTCTTCATTCAAAACGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAATGGCGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAGTCCCTTTATTGGAATATCCCCATCGCGAACACCACTGTCATCATGTTGGGGACGGGGACCTCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGGGCACCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //