Array 1 621679-624350 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822012.1 Streptococcus thermophilus isolate STH_CIRM_30 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 621679 36 100.0 30 .................................... TTGGCTCAAAGCCTTCTGATTTACATACAT 621745 36 100.0 30 .................................... GTATAGAGTAATTCATACTTCATCATACTA 621811 36 100.0 30 .................................... ACCTAGCTTTAAAATATTTAAAAGATAACA 621877 36 100.0 30 .................................... GAACAGGCTTTGAGTTACCAAGAGCCAAAA 621943 36 100.0 30 .................................... CAGGTAATGGCGGTTCAATCTTTGACGACC 622009 36 100.0 30 .................................... AGAAATTAAATACGAATTCGGTTCGCACGG 622075 36 100.0 30 .................................... TGAAAGAGGGTGATTGCTTTGAAATAACAT 622141 36 100.0 30 .................................... ATAGTAGACTTTACTAAATTTCGAGTAGAT 622207 36 100.0 30 .................................... CGGCTGCAGCTCTCTCGACCTCGTTTGACT 622273 36 100.0 30 .................................... ATTGCCTTATAAAGCAGTGTCAGCGACAGT 622339 36 100.0 30 .................................... CGTCCTCTGTGGAAGCTATCGCCACCGCTT 622405 36 100.0 30 .................................... GACGCTAACTGAAAACTGGTTGGACGAAAT 622471 36 100.0 30 .................................... CCTGGATGATGATTTGAAAAATGCTAGCTT 622537 36 100.0 30 .................................... GAGCTTGATGTTTTGAGCATCCTTTCACTT 622603 36 100.0 30 .................................... ATAAATTACACAGGACTATTCTTGAGTTGA 622669 36 100.0 30 .................................... ATGACATCAAATGTTACTATAAGGGATTTA 622735 36 100.0 30 .................................... ATGGTATCTATCTAGCATGAAAGATAGTGC 622801 36 100.0 30 .................................... CCCACACTTGTAAGTACATGGGATTTAGCC 622867 36 100.0 30 .................................... CGGTACTACTGGTTTAGGAATAATTGAATC 622933 36 100.0 30 .................................... TGAAAACGAAGGCTTTGATATTAGTAACGC 622999 36 100.0 30 .................................... AAGTAGACATATCAGCACCCCATGACATTA 623065 36 100.0 30 .................................... TTGAATTATCTTCTAATGAATTGTCATAAA 623131 36 100.0 30 .................................... TGCTTAATCCATTTTTGTTAGCGTATTTTT 623197 36 100.0 30 .................................... GAAACCAAGAAATGCAACAGAACGGAAGCT 623263 36 100.0 30 .................................... ATCAGGTAGTGGCTTTAGTCAAACAGATAC 623329 36 100.0 30 .................................... TTTGCATCAGTGAACTTGATGCCTGGCAGT 623395 36 100.0 29 .................................... TTATAAGGAATTTGGAAACAATTTTGGTT 623460 36 100.0 30 .................................... CCAACCCTTTAACGCTGATTGCAGTTACTG 623526 36 100.0 30 .................................... AGCTGACGATGTCCTTACACAAGCCCAACT 623592 36 100.0 30 .................................... AAGCGCTCCAATCAATATCAACAATAATAT 623658 36 100.0 30 .................................... TGTAACTGGCAAAGGTCAGCAGTATTTCAT 623724 36 100.0 29 .................................... TTCCTCTCTTTCAATAACTTATGATTATA 623789 36 100.0 30 .................................... GGGAAGAACATCGTAGAACACTCACTCAAT 623855 36 100.0 30 .................................... CATAAAAACCGCCGTCTAAACATTTATCTA 623921 36 100.0 30 .................................... TAGCTTGTATATAATTTGGTGCGTCGTTTT 623987 36 100.0 30 .................................... TGCGATTTTCTAAATACCAATCTATCAGGT 624053 36 100.0 30 .................................... CAATGGTTTAAAATACAGTAAATTGATATC 624119 36 100.0 29 .................................... TTCAAACTTAGTTACGAGCTTGCTTAGGT 624184 36 97.2 29 ......A............................. TATCTTCAAAGAAGGTATTATTCGTTTTG 624249 36 100.0 30 .................................... TATATAGTTTTAAACTTTCTTGACCTTCTG 624315 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //