Array 1 15955-16642 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXC01000005.1 Pasteurella multocida strain MSP58 NODE_5_length_193816_cov_75.144360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15955 28 100.0 32 ............................ TTGTTTACGATTTCGCCGTTTACAATTTCTTT 16015 28 100.0 32 ............................ ATAGAAAGAGATGGTTTGAGTTTGAGTTGAGA 16075 28 100.0 32 ............................ ATATAAAAACTCTGAAAATACACTGTGCCTTG 16135 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 16195 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 16255 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 16315 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 16375 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 16435 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 16495 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 16555 28 100.0 32 ............................ GCAAGTGGCACTTGTGCGATTGAGCCGTATTT 16615 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCTCATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 165593-164032 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXC01000003.1 Pasteurella multocida strain MSP58 NODE_3_length_276480_cov_88.650342, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165592 28 100.0 33 ............................ CGGTGTCGGGCTTTGATTTTTTCGTCAATAACT 165531 28 100.0 32 ............................ GAACCAGGAATACCAACATATGCAGTAATTGA 165471 28 100.0 32 ............................ ACGTTATCTTTACCAACCGCTCTATTCTCTGT 165411 28 96.4 32 .........................G.. ATACGTCTTGCAAAAGCGTCTCTGCTTGTGCA 165351 28 100.0 32 ............................ ACAAAAGCGACTTGAAAAACCACGTCTTGATA 165291 28 100.0 33 ............................ TACTCACTCATTCACCAACGCTTTAATGTGCAA 165230 28 100.0 32 ............................ TACTCTATCGAACCCCATCCAAAACGGCTGGG 165170 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 165110 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 165050 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 164990 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 164930 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 164870 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 164810 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 164750 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 164690 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 164630 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 164570 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 164510 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 164450 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 164390 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 164330 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 164270 28 96.4 14 ............G............... TCTTTGATTAATTC Deletion [164229] 164228 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [164212] Deletion [164187] 164182 28 78.6 32 ....TGA.TTT................. GACTGGAGTGAGAATGTCGTCGAAAACTTACA GCTT [164166] 164118 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 164058 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 27 28 97.5 31 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91664-91516 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXC01000007.1 Pasteurella multocida strain MSP58 NODE_7_length_138899_cov_87.626416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91663 28 100.0 32 ............................ AACCTGGATTCTCACCCTGAGAAAAAGCGCCA 91603 28 100.0 32 ............................ TTTTTAATCGGACTTGAACGATAATTACCGTA 91543 28 92.9 0 ...A....................T... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : GAAATTCTATGTCTTTCGGCATTCACTTCTGAAGTAAAGATTCCAAAATCTAAAATACAACAAGATATTATTAATGAATTGTCAAAAAGGGGAATTACTGCGGAACAATGTTCAAGTTATGTCGTTAAAAATGCTGGCGGAGTTGATGATTTTTGCTCTAATTTCAATTACGGCTATGTGACTGGAAAAAGCTCAAGAATGCCAAGTTTCGGAAACCATATCACATTACAGGATATGCTTTCAGTGCAAAAGACTTTAAACATTGATTGTAACACTAAGCAATATGTTAAAGAATACACAAGAACAAACAGCCGACCTCACTATGTTGCCCCAGTAGATTTTTCAAAATCATGGAAAGCATTCCAACCAAAAACAAATACCGTTAATTGTATTTCATTTGGCTCTTCTACTACCTGTAATGATGCAAGAGGAAACCTTTTAAATATAAATACTTGGTAAAATATAAATAAATATGTCTGCCATATTTTCGATATTAATCT # Right flank : AAATTGCGAAATTATTTGCATAGTTTATCAAAATTAAGTACACTCACCAGTGACAGGTAAAGCCTAGTATCACTGCGAAGCCTATGGTATCGTAAGCGTATGTTAAGTACGTCAGCACTAGGGTCTGTCACCACAAGTTTTCAAGCCGTCAGTTTTATGATAAATTGACGGCTTAATTTTTTGTGCAAAGGAATGACGAGATGGTTTCTGTTTATCTTGATGAAAGTGGTGATTTAGGTTGGAAGTTTGATGCACCTTATCGTAAAGGTGGGTCAAGCCGATATCTTACGATCGCTACAATTCTTATAAAACACGATAAACGCTATTTACTAAAGCGTCTAATGAAAAGTTTGTACGAGAAAACTAAAACACCTACAAACCAAGAAATAAAATGGGCTAATTTATCTGTTGCTGATAGACTTTGGATTGCTAAAAAGCTTGCTGACTTTAAAATTAAGCATGGTTCAGATGTTCAATTCCTCTGTATTACTGTTAATAAG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16343-15977 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXC01000014.1 Pasteurella multocida strain MSP58 NODE_14_length_61052_cov_82.324908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16342 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 16276 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 16210 36 100.0 30 .................................... TAACCCCTGAATAATAACTCACTACCTCAC 16144 36 100.0 30 .................................... CACTGCCGGGAATACCCACATAAGCCATAA 16078 36 100.0 30 .................................... TTCTATCAACTGATAAACCAGCCACTTTTG 16012 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ACGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //