Array 1 575-762 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXY01000031.1 Neisseria meningitidis strain NM1976, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 575 25 100.0 43 ......................... CAGGTCTTTTATAACCTTTGAATATTGCTGTTATCCCAAGGTC 643 25 100.0 18 ......................... GTTCTAGATTCCGCCTGC Deletion [686] 672 24 96.0 41 ........-................ CGAACTTTTATAAACTTTGAATATTGCCGTTATCCCAAGGT 738 25 96.0 0 .G....................... | ========== ====== ====== ====== ========================= =========================================== ================== 4 25 98.0 34 TAGATTCCCGCCTGCGCGGGAATGA # Left flank : TCAATCAGTTGCAATTTCCAAGCCCTGTTCCATTTCTTCAACTGTTTTTCCCGAGTAATTGCACTCTCCATCGTAGGATGCAGTTCATACCAAACCAGCATAGTAACGTTGTACCGTAATGTAAATCCCTCAATCAAATGCTCCCTATGTTGGTAAATACGTTGCACCAAATCAGATGTAACGCCAATGTATAACGTGCCATTACGTTGGCTTGCTAAAATATAAACCGCAGGCTGCATATAATACCCTTTTGAATTATTTAAATTTATATTCCCGCGAACACCATCCCGTGATTACTTTAACCTTTCGTTATTCCCATAGCTTTCCATCATTCCCGCAACTCTTCGTCATTCCCACGAAAGTGGGAATCTAGTTCGTTGAGTTTCAGTTATTTAGAATAAATTTTGAAACTTTAATCCCGTCATTCCCACGAAAGTGGGAATCTAGAACGTGGAATCTCAAGAAACCGTTTACCCGATAAGTTTCCGTGCCGATGGTTC # Right flank : ACGGCATCGGTCTGCTGTTTTCGGACGGCATTTCGGCTCAATCCAGCAGTGCGTCCACAAACGCGCGCGCGTCAAACGGGCGCAAATCGTCTATGCCTTCGCCCACGCCGATATAGCGGACGGGGACGGGGCGGTCGGAGGCAAGCGCGGCGAGGATGCCGCCTTTTGCCGTGCCGTCGAGTTTGGTCACGATTAAACCGGTCAGCCCTAATGCGTCGTCAAAGGCTTTGACTTGGTTGACGGCGTTTTGCCCGATGTTGGCATCAAGCACGACGATGATTTCGTGCGGCGCGTCGGGCATGGCTTTTTGCAGCACGCGTTTCACTTTTTTGATTTCTTCCATCAAATGAAGCTGCGTGGGCAGGCGGCCGGCGGTGTCGGCCAGCACAATGTCGATGCCGCGCGCTTTGGCGGCTTGGACGGCATCGAAGCACACGGCGGCGGAATCGCCCGTGGTTTGCGAAATCACGGTTACGTTGTTGCGTTCGCCCCAAGCTTGA # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.49, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGATTCCCGCCTGCGCGGGAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 406-1562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXY01000037.1 Neisseria meningitidis strain NM1976, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 406 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 472 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 538 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 604 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 670 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 736 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 802 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 868 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 934 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 1000 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 1065 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 1131 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 1197 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 1263 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 1329 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1395 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1461 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 1527 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //