Array 1 374073-372963 **** Predicted by CRISPRDetect 2.4 *** >NC_006624.1 Thermococcus kodakarensis KOD1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 374072 29 100.0 38 ............................. CGTTAAGGCGATAAATGTTTCATGTTCTGCTTCGGGTA 374005 29 100.0 39 ............................. CGTCCACGCAAAGAAAAAGGTAAAGCTCTTCAAACTCAA 373937 29 100.0 38 ............................. CTCAATGACTCTGCCCATCTCCCTTTTCATGTCGAGAA 373870 29 100.0 38 ............................. CACGAAGATGGGGAGATGGCTTTTAACGGGTTCAACGA 373803 29 100.0 39 ............................. CAGGTTTTTCATTGGAGCTATCTCATACTGGTGCTTTCT 373735 29 100.0 38 ............................. CGAGTTTGCGAGGGCTTTCTGAGTGAGGTAACGTGAAA 373668 29 100.0 38 ............................. TATTATCAAGGAGGATTTAAGGCAAATACTCCGCGAAA 373601 29 100.0 36 ............................. TCAATTCCGCGAGGGTGGTAGGGTTCGGGTTCTTTG 373536 29 100.0 37 ............................. TAAGGGTACGGCGCAGAGGCCAGCGGTGAGGAGGATA 373470 29 100.0 39 ............................. TTTTGAGCGTCAATCTTCGCCTGCTCTTCATCGCCATTC 373402 29 100.0 39 ............................. TGAATCTGGACATCAGACATCGGCTTTCACCTCCATCAC 373334 29 100.0 39 ............................. TCGCCTTCTTGATGTCTGCGGGCTTCTCTATATCTATGT 373266 29 100.0 39 ............................. TCAATCCTCCTCTCGGCCTCAGGAGTGAACTTCGGAAAA 373198 29 100.0 40 ............................. TCCGTGCTTTGGCTGGTGGTGTTTGCAGGGGTGGTGCCGT 373129 29 100.0 38 ............................. TTAGGTGTTAGGTGCCTCGGTGACGTCACGGAGCGCCC 373062 29 96.6 40 .................A........... GTACGTCATGGCCACGGCTTCCCTGAATGCATCCCGCACA 372993 29 86.2 0 ..........A.......A.A....C... | G,A [372976,372981] ========== ====== ====== ====== ============================= ======================================== ================== 17 29 99.0 38 GTTGCAATAAGACTCTAGGAGAATTGAAA # Left flank : CTCCGGTTAGTTCCTTTTATATTTTCGGTCCTATCACGTTTAAATCGTCCAGTTGTCTGAACTGAGGTGTATTAGCCATTGAATTTTCAAAATATTTGCTGATCAGCCTCGGGAAGTCTTTAGTAACGTTTGGTTACTATCAAACGAAAAGTTATATATTCAGCAAAAATCGTGACGAAATTTTTTCGGAATTCTGAATGGGGGCACTTTAGGGCCTTTTTGTGCCCGTTCCTAATTCTGACACGATATTTTTGGCAAAAAGCGTCTGAAAACCACTAAAGTTCTTTTTAAGACTCTAAAGATGCCTGGGAAGTCTTCTGAACGTTGTTGTGCATGCTCTTAACGGAAGGAGGAGAACTTGTTTCTGGCTGAAAAAAACCGCTCAAAAGCTTTTTAATTGGGGACCGTTAGGGGCTTTTTAGAGCACCCTTTGCGGAAAAGCTTATAAGATCCGAGCGTTCTTAGTAGTTTGTAGGGAGAAAGGAGGAAAAAACCGCCCT # Right flank : ATGAATTCAGAAAGAGAAAGTCCGAGAAAAAGATCCTCAGACCTTGATCCTCTTCCAAACAGTTCCCTGCGGCGTGTCCTCAAGCTGGATTCCGAGGTTTCTCAGCTCGTCCCTTATCTTATCGGCGAGGTCGAACTTCCTCTCCTTCCTGAGCTGGGCGCGAACATCGATGAGGAGCTTTATCAGGGCCTCTTCTTCTCCAGCCTTCTGCTCCCTGAAGTAGTCCTCAAAGATGCCGAAGACCTCGCTCACCATCTTAAAGAACTCCCAGGCCTTCCTGAGAATGCTCTCCTTGGGCTTTTCGACCTGCGTTAGGTAGCGGTTAATCGCGTTGCTGACCTCGAAGACCGCTTTGAGTGCCTCGGCCGTGTTGAAGTCGTCGTCCATTGCATCGTAGAACTTCTTCCTGCCGTCCCTTATGGCCTCGTAGGCCTCAAACTCCTCCTCGCCCCACTTGAAGGATATCTCCGCTCTCTCCATCGCCACGCGGATGTTCTCGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 470567-468981 **** Predicted by CRISPRDetect 2.4 *** >NC_006624.1 Thermococcus kodakarensis KOD1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 470566 30 100.0 40 .............................. TCAACCTTGAGAGCCACGACGCGATTATGAGCAAGACCTA 470496 30 100.0 37 .............................. CCGTAGATCATGCTCGCGCCGAAGTCGGGGAAGACTG 470429 30 100.0 34 .............................. GTAAACCTATGCCACAGCCCTTATCTGGGCCACA 470365 30 100.0 40 .............................. CCCGCTTCTGGCTCAGGCTCAACATCTAGCCTTGGCTCAG 470295 30 100.0 39 .............................. CAAGCTTGCCGTCTGCATTTCTCTCCACGACAGAGACCT 470226 30 100.0 38 .............................. TATAGGGAAATATAGGGAAAATCCGGGAAATTCGGGGA 470158 30 100.0 38 .............................. AACTATCGGCGTAATCTGGGCTTTTCGGCGGGTCAATA 470090 30 100.0 38 .............................. TCGTCAAGCCCATCGCTGATGAGGCCTTCGAGCAAGAA 470022 30 100.0 41 .............................. AAAAAGGTGGGTGGTGGGTGACGGTGGTGGGTGTTGCGCAA 469951 30 100.0 39 .............................. GGGAGAACCACCCGCCTTGACCTTCTTTTGATCTCTAAC 469882 30 100.0 38 .............................. GGGCCTGGGAGGAATTGCCCACAATCAAAAGCCCGGAC 469814 30 100.0 39 .............................. GACTTTGGGGAGTGGTGAGGGGCAGCCCTGAGTGAGGGC 469745 30 100.0 36 .............................. TCCACGCGCGCCGTGCTGGATGTTATCAAGGAGAGG 469679 30 100.0 37 .............................. GGTCTTCGCCCAGTTCTTTAATGGCTGTCCCCACGTC 469612 30 100.0 36 .............................. CTCACGAGGCGGCCGCACTACCCAACTATGCTACGC 469546 30 100.0 38 .............................. AACTACAAGTGGGGCGGTGTTGATGCGTTCTTCGTGCT 469478 30 100.0 36 .............................. GGTCGCGACCTATGACGTTCAGGTGAACCCGGCCAT 469412 30 100.0 38 .............................. AGTTTTCCATGAATGCCCTCTTTCCTGAAGACTTCAAA 469344 30 96.7 36 .............................T AGGATTTCTGCAATTTTCTGGAGGGCCTTCCAGCGC 469278 30 96.7 37 .............................T TCCGCAGAGCCATTGGCATGGGCTTCCTCGACGAGGA 469211 30 96.7 37 .............................T ACCGACGTCGACGTGAAAGTCAAGGTGTGGAAAGTTT 469144 30 96.7 38 .............................T AGAGCCGGCTCTCTGAACGCCTTTACGATTTTCTCACC 469076 30 100.0 36 .............................. TTGGCCGCGTCAACTTCGAGGCTCTCGACCTGGCTT 469010 30 86.7 0 ..............T..G.......A...T | ========== ====== ====== ====== ============================== ========================================= ================== 24 30 98.9 38 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : CTTGATGTCCTTGTCATCGGCAAATTCGTCGTATCGCGCTGAGAAGCTTTGTTTTTGATCGTTCTCCTTTTTCGTGGGTTTTTATTGAAAATAGGCCTGTGTCGAAGGTTGGAAAGTCTTTAGTAACGTTTGGTTATTATCAAACAAAAAGTTACATTTTATCCCGATTTATATGACGAAATTTTTTCGAAGTTTTGAACGATGATACTTGAGAAGTCCTTTTATATATTATCCCAATGGCAATTGAGTGTTTTATCGTAAGAAGGCGTTAGAGTGGAATAATTCGAGTTTAATGCCCTTAAAATGCCCGGGAGGTCTTCTGAACATTGTTGTGCATGCTTTCAACGGAAGGAGGAGAAACCTTTTCTGCTTGAAAAATCCGCCCACAACTCCTAGATTGGGGGCTTTTGAGGGCTTTTCAAAGTACCCTTTGCGGAAAAGCTTATAAGATTGGAGCGTTCTTAGTAGTTTGTAGGGCGAAAGGAGGAAAAAACCGCCCT # Right flank : GAACCAGATCCCAACTAAATACTATTTAGTTGTGAGTTTTAGTTGCGAATTGAGACCAAACCGCTCAAAGGATGTGGGTGTTCTTGAATTTTAATGAGCATTTTAATACTTTGATGTCTATTTTTTCATTGAGGTAACGTTATAAACATCGCTGAGAAGGGAGAGCGGTGATGGTAATGGCGCTGAGCGACAGGCTTGACCTCGTTAACCCTTCTGAGATTAGGAAGCTTTTCGACCTCGCCGCTGGGATGCAGGATGTTATCTCACTCGGCATCGGTGAGCCCGATTTTGACACCCCTGAGCATATCAAAGGATACGCAAAAGAGGCCCTCGACAAAGGGTATACCCACTACGGTCCGAACGCGGGCCTTCCAATGCTAAGGGAGGCCGTTGCCAAAAAACTCAAGGAGCAGAACGGCATAGAGGCCGATCCAAAAACTGAAGTTATGATCCTAACCGGAGCCAACCAGGCGTTCCTCATGGGTCTGGCAACGTTTCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 833495-835984 **** Predicted by CRISPRDetect 2.4 *** >NC_006624.1 Thermococcus kodakarensis KOD1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 833495 30 100.0 39 .............................. TTTGCCACCCTGAATCACTCTTGCAACCGCTATTCTGAA 833564 30 100.0 42 .............................. CGTCTTCCTCATCGTCGTAGAGCTTGACCCTCCACCCACCGG 833636 30 100.0 37 .............................. TTTTTTAGGTGTAGTTTGGTGGTGTGGGCGAGGTTCA 833703 30 100.0 38 .............................. GCGGAGAAGAAGCCACGGGCTACGCAATACTTGCCTAC 833771 30 100.0 38 .............................. AAGAGACGATCATGCTCTCACCCCCAGGAGTTGCTCGT 833839 30 100.0 37 .............................. AACGATTTGTTCTCTGTGGACTTGGGTCTCATTGGGA 833906 30 100.0 42 .............................. GGAACACATCGCCAGGAACCTCAAGCGACTTCGGGTGGTCGG 833978 30 100.0 38 .............................. CCAAAATGAATAAAAGCCCCTATCCCTAATAAATGTAA 834046 30 100.0 37 .............................. GCAGATGGTGAGATGGAGGTAACAATAGAATTTGTGG 834113 30 100.0 37 .............................. GGTTAAACTCAGTCAGAGGGCCAGTGAGGTCCTGAGA 834180 30 100.0 40 .............................. CCTGTGCAGCCTGGAGGTAGTAGTCACCGATCATTTCCTC 834250 30 100.0 37 .............................. TCTTCAAGTGAAGCGAGGATTTCAGCGATCTCTCTCT 834317 30 100.0 40 .............................. AACACTTGCGAACTTTCCCGGCCAGAACAAGGAAAGCGAG 834387 30 100.0 38 .............................. CAAGTTTGAAGAATTAGTCAGTGAAAAAGGCAAACAGT 834455 30 100.0 38 .............................. CAGACTTGCCGTTCACTGGGACAGGGATGCGGAAGCGG 834523 30 100.0 38 .............................. ATGGACTGAAAGACCCTCTTCAGTTCTTCCGCGTTTTT 834591 30 100.0 37 .............................. AGTTCTAAGACTCTCCCCAAGAAAGGGCACTACGTCT 834658 30 100.0 40 .............................. TAGGACATCACCTCACGGTGCTGGCGGGAGGGCCTTCACG 834728 30 100.0 35 .............................. AGATAACGCTCGACGTGCCAGCAAACAAAGCCGAA 834793 30 100.0 38 .............................. GAGTTCTAATGATTAGCTTAACAATATCCCCATCTGAT 834861 30 100.0 38 .............................. TCACTTCTCCTGAGAAACGAAAGGAGTCGAGAGTCTGT 834929 30 96.7 38 ..C........................... TACTTCCGGCTAAGAACGAAAAGCCGCTCGACAAGCCG 834997 30 100.0 40 .............................. ACATAGCCCTCTCCCAGGCCGCACAGGTCTTCAGGTACAA 835067 30 93.3 38 .................G...........C GATTAAGGGTGGCGTCTGCGCTGGCGAACGGGCTTACG 835135 30 93.3 37 .................G...........C GTAGTACTTCTTAAGCATGCGTTCACGCCTTAGATAG 835202 30 93.3 38 .................G...........C CTGTGGTGGTCATGATAGTACGTGATAGCAGCACTAGC 835270 30 93.3 37 .................G...........C TCGCTATGACAATCTTTGCGTCCTCATCCATCAGAAT 835337 30 96.7 38 .................G............ CTATCAGGCCCTCTGTCTGGCCAGTTAGGTCCTTCCAC 835405 30 96.7 37 .................G............ GAAGATCGTGGCCAAGATACTCAACGAGATGTCGAAG 835472 30 96.7 38 .................G............ GTCTTCGCGAGGATCTCCCGTGAAGAAGACTGAGACCG 835540 30 96.7 47 .................G............ CAAGGACTACCTACAATTTCCCTACCACTATCGGCGCGTTGCAATAA 835617 30 96.7 37 .................G............ AGAATAACGCCGTCACCGGCCAGGCGGAGCGCTTTAG 835684 30 100.0 37 .............................. CAACTCTCATACATCACACCCCCAGCTCATAGATTTT 835751 30 100.0 38 .............................. AGGCTCGCCGCGCCGCCGAGGAGCATCAGCGCTGGCTC 835819 30 100.0 40 .............................. AGCTTATACATCACGTAAACCGTGAACGCTGAACCGACCA 835889 30 100.0 36 .............................. GTGTAGCAGTATGCCCAGAACCGTGCCCACTGCCAG 835955 30 90.0 0 ........................CA...A | ========== ====== ====== ====== ============================== =============================================== ================== 37 30 98.5 38 GTTGCAATAAGACTCTAAGAGAATTGAAAG # Left flank : TGGAAGCTCAAGGAGCTGGGTTTTGACGTTCTATCACGCTAAAAGGGCTTTGATTTTGTGGAGCTCCTTTTTTCTGATTTTGCTTTGGAATCAAACTCGCAATGAACCTTTTGAAGTCTTTAGTAACGTTCGGTTATTATCAAACAAAAGGTTACGTATTCTTCCAGTTTTTGCGACGAAATTTTTTCGGAATTCTGAATAAGGTCATTTTAGAGCTTTTTTCGTACTTCCTCCCAATGCAGATGCAATATTTTTGGCAAAAACTTCCTTAAAACTGGTCAATTTCTTCTTAAAGATCTAAAAATGCCCGGGAAGTTCTCTGAACATTGTTGTGCATGCTCTTAGCGGAAGAGTGAGAAGCCGTTTCTGGTTGAAAAATCCGCTCACAATCCGTGAATCAGAGGCGTTTAAGGGCTTTTTAGAGCACCCTTTGCGGAAAAGCTTATAAGATTCGAGGGTTCTTAGTAGTTTGTAAGGCAAAAGGAAGAAAAAACCGCCCT # Right flank : ATCCCAAAACAGAAGAAAAGGAAGGCATCAGAACAGCCACTGGTTCTCGATACACTCGTCGCACGGCGGCTTCTCGCCGGCGATGGCCTTGAACTTTTTGTAGATACACTCCGGCAGGCCGAGCGGGCAGTGGTCAGGATACTGACCCGGCCTGACCTTCGTCGGATCGAGCTTGACCTTTATGTAGGCCTCGTACTCCTCGACCTTCTTCCAGGGAAGTACCTTAGCGCCGTAGATTACGAGGTCGTCTGCTATCCTTGCGTAGTCGCCGACGACGGCGTTCTCTTTGATGATTACGTTCTTTCCTACGACAACACCCTCGCCGAGGATGGTGTCCTTCAGCTCGGCGCGCTCCTTGATGATGTCGCTGCCGATGAGTATCGAGCGCTTAAGGTATGCCTTGTCCTCCACGATTGTGTTCGGGCCGATGTAGGTGTAGGCCTTTATCTTGACGCCGTGGCCGATCTTCGCTCCCTCGTCGATGTAGACTGGTCCCTGAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //