Array 1 2406-1435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQK010000038.1 [Clostridium] scindens strain DFI.1.162 NMCAPNLL_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2405 33 100.0 34 ................................. GGATCATCTGGAACTTGAGACATACCAGGGCTGC 2338 33 100.0 33 ................................. AAAGAGCAAGAAAGTCAGGCAGACAAAAACTCC 2272 33 100.0 34 ................................. GGCTGCCGGCATGCAGGCCATGCAGGGCCTGACA 2205 33 100.0 33 ................................. ATCCAGTGTTATTTCGCCTCTGCCACAAATACC 2139 33 100.0 35 ................................. TGCGCTCATGCACATCGGCTCGCCTGTCTCAGCAT 2071 33 100.0 35 ................................. CTGCACTCAATCCCATTTGCTGGAGACGAGCTGCA 2003 33 100.0 36 ................................. ATGCCAAGCGTCTTTCGCAGCTTGTGTGGATATACG 1934 33 100.0 33 ................................. CGCTTGAAGGATGGAATACTGATCGTCTTGGAT 1868 33 100.0 33 ................................. CATAATAGATTGCAATATTTCATAAAAATACAA 1802 33 100.0 35 ................................. GGATATTGCTGATAAGTAGACTTACAAGCATGAAC 1734 33 100.0 35 ................................. CATCATTCGTGATTTGAAAATGCGCCAGCGCCATT 1666 33 100.0 33 ................................. TTATCCAAGCGTAGACGATATATGCCTGATCCT 1600 33 97.0 33 .....T........................... GTGTCATTAAGATAGGCAAAGTTTATAGAATCC 1534 33 100.0 34 ................................. TTGGATATGATCTATTAGGTCCTGATAGTTTTTC 1467 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 99.8 34 GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Left flank : TAAAAAGCGCCTCTAAAAAATATAAAGATTGTGAAAAGGCTTATGGGTTTGACATGGAAATTCCCAATAGAGAAATGATTGTAAGAAATGGAAAAGAAGTAGAACTGCCTGCCAAGGGGCCATATTCTGATGAGAAGACCAAGCCGTGGAGTAAATGGTCGAAAGAAGAATATGATGATTTCCAAAAAGAATTAAAAAAGAGGATAAAAGATAAATTTCCAGGAACGTTTCCGATAGAGTGGGAAGGATCAGCCTGGATCGAAATAGCGAAAAAGCGGAAATAATTGTGGGCTTGGGACTGGTTTGAAGAAATTGGAAATATGGTTCAGGTGCGAATGGTAAGTGCACATAAAATGCGTGGGGGATTCGCACCTGGAAAAAGGGGTTAATTTGGAGAAAAGGTTAGAAAAAATTAATTTTAAAGAAGGATTTGCTTGAGTTATTGTGGGTTTTGTGTGTAATATGTAAGTGGGCAAGAGGTATTTTTGTGCGTTTTTGCT # Right flank : TTTTTGGCTGTTACGGAATGAGGATCGGGATAGCTTCCCTCTCGAGGTAAAGTGGATTGAAATTCCTGGTAACTGGTGCCATATGAAAAAGATGTTAATGAACTTCGCGGCCAATACATGATATATCCTAAAATACATAAAATCCTTTGTGAAAAAGGTTATGCTGTAAGCATTGCTTCCCTTAAGATTATTATGCAAAAGGAAAGAGCACGGATGTATGAGCATAGGAAGAAAGCAAGGAACAGTCTAAATTTATTCAGAGAAAATCTTTATGTCAATTAATTTATAAAAAATATAGAAGATGTTATAACGATACCTCAAAACAATATGAAGAAGTATTGAAAGAATATCCTCAACTAGGACAAATATATTCTTTGGTTAAAGATTTTTACAGTGTGATTTTTTCCAAAAAGCCAGAAATATTAGATGACTGGATAGAGTTTGCTCAAAAATGTGATATACCTGAATTACAGACATTTCTTGAAGGATCCTTTCGAGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16983-18553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQK010000046.1 [Clostridium] scindens strain DFI.1.162 NMCAPNLL_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 16983 33 100.0 34 ................................. GTCCTTATGTGCCGCTGTAGATTTCTGGATACTG 17050 33 100.0 35 ................................. CTCTATTCCGGCTACCGGGCGAACTCCCAGTAATG 17118 33 100.0 33 ................................. TACTACAGTAGTTAGCCATAGAGGCTTGACTAT 17184 33 100.0 35 ................................. TCGCACAACTTTCGCTCCTGGGAAGTGTGGCTGAA 17252 33 100.0 33 ................................. TACTTCCTGCTCGAATTCCTTTACCATATTCTC 17318 33 100.0 35 ................................. CCTGACTCCCTCCCCGTATACTATTACCGTGCCCG 17386 33 100.0 34 ................................. TCCAGTATCCCCCATCCCTGGTCCATATCTGGAT 17453 33 100.0 35 ................................. ACCCAATAAGACACAGGTAGCATGTCAAGCACAGG 17521 33 100.0 33 ................................. TCAGATATGTGGATATCTTCACAAACTTATTCA 17587 33 100.0 34 ................................. CAGGGTAGAGAGGGCGATCAGGCACGCATTCGCG 17654 33 100.0 34 ................................. GCACAGCATTACGTGTGCGAGGGAGAGACTCAGT 17721 33 100.0 34 ................................. TCCACGGATGTTGTACCACTGCTCCGGTTCTACC 17788 33 100.0 35 ................................. TCAAAATCAATCGTGACATTGTTGATCAGCACATC 17856 33 100.0 33 ................................. ATTTATGTTGCACTCTGGGGGCTCGTCCCCTTG 17922 33 100.0 33 ................................. ATTTCCCTGCTGTCCCCATGGGAAGGAATATCC 17988 33 100.0 35 ................................. AGACTCAGAGAAGAAGCGGGAGGCTTTCCGGGAAG 18056 33 100.0 34 ................................. CATGATCTGGCAGGGTATATCACTAAGACGCCGG 18123 33 100.0 33 ................................. TGAGGATAGGAACAGATTCACAGGGTATAAGTA 18189 33 100.0 33 ................................. TGAATACATCCCCTCGATCTCTTCGAGTATCAG 18255 33 100.0 33 ................................. GATTGGAAGCACTGCTTCCTTTCCTGCTTCTCC 18321 33 100.0 33 ................................. GATAAAGGCAATGTGCAGACGGCCACGCAGATA 18387 33 100.0 33 ................................. CAATGGAATGGGGATTGATGTAGACGCATTATT 18453 33 97.0 35 ....................T............ AGACTTAATAAGAATATTAACTTAAGGACGAAGCA 18521 33 97.0 0 ...T............................. | ========== ====== ====== ====== ================================= =================================== ================== 24 33 99.8 34 GTCGTTCCCTACATTGGGAACGTGGATTGAAAT # Left flank : ACAAGTTAGGCCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATTACAAGATATTCTGACGCAGGGGTAGTATGCCTCTGCGTCTTTTCGATATTGAGGAAAATAAATTTAATAAAGTTCAGCAAGAATAGCAGTCAGCAACGTAATGTACTTAAGAAAATTCGCAATCGAAGCCATTCTTGAAGCCTTAGTTATCAGAAAGGCTTATCAAAGTCTTGGGAAAAATAAAAAGTAGTAGAGGAAATTTGAAGATTAGATAGCAATTTGGTAGTGCGAATATGAAGTATACATAAAAATCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAAATTGAGTATTGTATTACAATATAGATTAAAGAGGAAAAGATATTAAAAGAAAACCGTAATATGTTACAAATATAATGTTGTTTAAGATTGATATTTGGATATGTTTGCT # Right flank : CAATGGAATGGGGATTGATGTAGACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTACATTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 8964-9789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQK010000049.1 [Clostridium] scindens strain DFI.1.162 NMCAPNLL_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 8964 32 100.0 35 ................................ ATCCTCCAATGCTTGACAACAATGATCCCGTCATC 9031 32 100.0 34 ................................ CGCAATCATCTGCATTTTAAAACCGCACACAGGG 9097 32 100.0 34 ................................ TGTTTTACCCTCCTTGATTTCCTCTATTCCGGCT 9163 32 100.0 35 ................................ TCTGCCCGATCGCTCTCCGTCTCAGCGGCGGATAT 9230 32 100.0 35 ................................ CTCAGATCAATCAGGTGTTTCTTGCAATTGTTGTA 9297 32 100.0 33 ................................ ACTGACATCCTCCTTGTCATCTTTCGTAATTTC 9362 32 100.0 34 ................................ TGAAACCATGCTTTCAGCTGCGCAAGGCTGTTGG 9428 32 100.0 35 ................................ TCGTTGGATTTGACACAAGAAGAATTAGAGCGGCT 9495 32 100.0 34 ................................ AGGTATGCGACTGCTGCCATCTTATGTTTTTCGC 9561 32 96.9 34 .............C.................. TCGTCATCCCATCCCATCTGCGAAAGTTCCAGGA 9627 32 100.0 34 ................................ ATCTAAGAACTGTTTAATAGCAGCATTGCATTCT 9693 32 96.9 33 .............C.................. CTGCTCCTGGCAGTCGCACTGCTCGCCAGGATC 9758 32 71.9 0 ....A.....ACA........CAA....G.T. | ========== ====== ====== ====== ================================ =================================== ================== 13 32 97.4 34 GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Left flank : GGATGCATATCCGCCATTTTTATGGAAGTGAGGTGACATTATGCTGGTATTGATCACATATGACGTTAATACAGAGACAGCGGCCGGAAGAGCAAGACTAAGGAAGGTTGCCAAGCAATGTGTCAATTATGGAAGGCGTGTTCAGAACTCGGTCTTTGAATGTATTTTGGACAATGCACAGTGTGTAATGCTGAAATCTACTTTGATGGAAATTATTGATGAAGAAGTGGATAGTTTGAGATTTTATTATCTGGGAAATAAATACAAGACAAAAGTAGAGCATGTGGGAGTCGATAAAGGGATTGCTGTGGATGAAACATTGATTCTGTAGTGCGAATGTGAAGCACACATGAAAATCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAAACTGTAAGTTATATTAGGATATTAATTAAATATCAAATCATATCTAAAGAAAATGTAATTTACTACAAAACATATTACTATTTTCTTTTGAAATTTGGATATATTTGCT # Right flank : TATTACCATAGTAGATATAGGCGCCCCTGTACAAGGTTGATCCACTTGTGAGAATCAGAATATAGATACCTCTTAATGGGCATAATAGTTTGATTGTTTACCGCAACAAAAAGCAAGGCCTATTTTAAACAAACCATACTACGAAGTTATTAAAAATTAACTAACATGTTTAATTCATAATGATACATTTAAAGGGGAATAAAAGTGATTTTACGCAGAAATGCGAAAAGATTTATCAGTTTTGCATATATAGAGCAAATGCCCATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCCAAGCACCTACATCGCAGCATTAATTGCAGCCACAGCGCCATCTGCCACGGCTGTTGCAGCCTGGCGTACCTGCTTGACGCGGATATCGCCAGCAGCATATACGCCGGGAATGGAGGTTTCCATTTTTTCATTCACCGGAATATATCCGTTGTCTAACTTAAGTTCCGTATATAATTCGGTAT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA //