Array 1 276-966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFVI010000020.1 Clostridium chauvoei strain S0103-08 contig00020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 276 30 100.0 36 .............................. TAATTGAAACTAGTATCACTGATTCTTTTTTTTCTT 342 30 100.0 36 .............................. AAAGGATTTCTTGTTCCGTATTTTTTAGATAAATTA 408 30 100.0 37 .............................. GGCACTTGGTAAAATATACCTTTTGCTTAAACTCTGC 475 30 100.0 35 .............................. TAAAATACCACTCTTCTATTAATCTTTGGCTTGTA 540 30 100.0 37 .............................. ATCTGCTTAGGATAGTCTTGTGTTTCTTCAAAGCTAG 607 30 100.0 36 .............................. ATTGATGGAATGGTTAATTGATTATAAGAGATTGAA 673 30 100.0 35 .............................. CTTATCCATCTGCCCATACCAGTTATACCATTCCA 738 30 96.7 36 .......................G...... ACATATTTAACTTTCAAAAGCAACTGATTGCAATTC 804 30 100.0 37 .............................. ATGGTAGGCAATATATTTGTTGGAACTTATACTAAAG 871 30 100.0 36 .............................. GATTTATAGTTTTGACTATGATGATGAGTATATATA 937 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.7 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : CTACGCTAGCGGAGCTATCAATAATATTTGAAGATCAATTAAAAGATGAATTAGCTTAAAAGCTTGTACTTTTTATAAATTATATGCATACTATTAGATTTTTTTGAAATACTAAAAAAGGTAATAAAAAACATTATTAGTATTTCTTAAATATAAAAAAATATTACTGGAAATGAAAATTTCCAGTAATATTAAAATAATAAAAATGATAATTACACAGAATTATCTATTCTCTCAAATATCCTAACAATTAAGTATTATCTCTTATTCCCCTTG # Right flank : TACAAGGCAATTTGAGTACTTGAGTATACCCAATTTGATAGACACATAGAAAGTACGTATAATAATAATTAAGAAGGATGTGTTTATTAAATGGGAAACCAAAGAAGATTTACTAAAGAATATAAAGAAGAAATAATTAGGCTAGTAACAGAACAAGGTAAAAAGGTTTATGTTGGTGATATTACCTATATAAGTACTGAAGAAGGCTAGTTGTATTTAGCTACTGTAATTGACTTATTTGATAGACGTATTACAGGTTGGGCAATGGATTCTACTATGACTAGAAGACTAGTTATAGATGCCTTTAATACAGCTGTATTAAAGGATGTTGTTATGATAATGCTTGTGCAGAATTATTCTTCTTATCTTTAAAGAAGCACTTTCTTTATGGAAGAAAATTTAAAACGAGAGCGGAATCAAAACAAGCTATAGTTGAATATATTGAATTATTTTATAATGCAAAAAGATTACACTCTACCTTAGGGTATAAGTCACCAAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2172-237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFVI010000042.1 Clostridium chauvoei strain S0103-08 contig00042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2171 30 100.0 35 .............................. AGATAACAACTGGAGAATAAAACCTATAGAAGAAG 2106 30 100.0 37 .............................. AAATTGTGTTCCGCCGGGTGCAAAATTCCCTTATATA 2039 30 100.0 37 .............................. CAGGAGTCGTTGTATTTGATGAAATACATGAATATGA 1972 30 100.0 36 .............................. AAAGGAGAAATATATAGAGTTGATAAAAAAATATTT 1906 30 100.0 36 .............................. ATTCTCCTAAAGATGATAAGAATGAATCTTTTAATG 1840 30 100.0 36 .............................. AGATAAGCTAGGTAGTGACCCTGCTGGAAAATTACA 1774 30 100.0 36 .............................. GCTGAATCTGGTGAGGACAATGTTGATATAACAATT 1708 30 100.0 36 .............................. TTTGTGCAATACTATAGATATAGCAAGTGCAAGTTC 1642 30 100.0 36 .............................. CATCTGACACTAATAAAATAGAACTAGAGATTTACA 1576 30 100.0 34 .............................. CCTTCTGATGATATAACATTTGCTATAAGTTGTG 1512 30 100.0 36 .............................. GTTAAAAATTTTCACCCACAAGGAACTTTTATACAA 1446 30 100.0 35 .............................. AGTGAAAAAGAAAAGGAAATTAGAAAGAAAATAAG 1381 30 100.0 35 .............................. AAGTCAGTTTATGTGTGGATTAATCCAAAAGCATT 1316 30 100.0 36 .............................. TGGACTTTCCTCCCAAGCTTATTATTTTTTAAAACA 1250 30 100.0 36 .............................. TTGTTAGCTTTCTGTATTTGCAAATCGCATATAATT 1184 30 100.0 35 .............................. AAATTTGGAGGGATAATTTAAATGGGTATATTAAA 1119 30 100.0 36 .............................. CTTTTAACATATCCCAATCCTTGATAACGAGAATAC 1053 30 100.0 36 .............................. TAGATTGAATGAGCATAAAAGCTTTTACTGTTTAAC 987 30 100.0 35 .............................. GTACAAGTGCAAGAATAAAGAATAGTGGAAAGGAA 922 30 100.0 36 .............................. TTAAAGTTTCGGTTAGCTACGTCCATATTTTCCCTG 856 30 100.0 36 .............................. TTTGAAAGAGGTGTATTAATATGCCTATTTTTTTAT 790 30 100.0 35 .............................. GAGCAAGAAGAATATAGTACATCAAAAAATAATGA 725 30 100.0 36 .............................. TACTTAGGGTTTTCCTCATAACACCCGATATGGTAT 659 30 100.0 35 .............................. ATTCTTTGCTTTTATCTCTATATTTAACTATCTCT 594 30 100.0 36 .............................. CAGAAAGGCTAGGAATTCTAATAAAGAGTACGATGA 528 30 100.0 36 .............................. ATTGTAAATCAAGTGAGACCTTTCCCAACACCGGCT 462 30 100.0 34 .............................. AAAAGGAGCTGATGGGAATCAAGGACCAATTGGA 398 30 100.0 36 .............................. TAAGGAAATGTACAACAGTATAATTGGTAAAATGAA 332 30 100.0 36 .............................. GGTAGAAAATAATGATGAAATAAAATATTGTTTTTA 266 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 100.0 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : ATAAAACCTTTTTACCATTTAACTTAAAGGATGGGATGTAAATTGAAAAAACAAATTAATTATAATTACGTATTTATATTTTATGATATAAAGGAAGAACGTGTAAATAAAGTATTTAAAGTATGTAAAAAATATTTATCACATTTTCAAAAATCAGTATTCAGAGGAGGAATAACTCCTTCAAAATTAATTTTATTGAAAAAAGATTTAAATAAAGTTATAGAAAAAGAAGAAGATTTTATATGTATTATTAAACTTTTAAATGGGGATGTTTTTGGAGAGGAAATAATAGGAGTTCAAGGGCAAACAACAGGAGAAAGTTTAATAATATAAAATTACCAACCTAATAATATAGGTTAGAGCTTTAAAATACTACGGTATAAGTTATTTTTGTATTTAACTTTTATTTATAATAAAAAGCTGGTAATATATTTATATAAACATTATAAAATGGGCGTTGCATAGATATATAGTTATAAAAGAACTCTCATTTTTCTAAG # Right flank : TATCCGAGACAGTAGATAGTTTTGTGTAAAAACAAAACTATCTACTGTTTTTTGTATTAACAGTTGGAAGTTTTGGAATAATATACTATATAAATTAGGAGAAATTATTCTGACAAGAAAAATTGATACCAACTTTGATTACAATGAGGAAATTAAAAGATGCAAAACAATCGATGATGTAATGGGTAAAAACGGATTAATACAAAGATTAGTTAAAGATGTTCTTGAAAATATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //