Array 1 63434-61817 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSXJ01000018.1 Corynebacterium diphtheriae bv. gravis strain 4299 Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63433 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 63372 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 63311 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 63250 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 63189 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 63127 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 63065 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 63004 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 62943 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 62882 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 62821 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 62760 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 62699 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 62638 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 62577 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 62516 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 62455 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 62394 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 62333 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 62272 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 62211 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 62150 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 62089 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 62028 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 61967 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 61906 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 61845 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : GGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 500-917 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSXJ01000020.1 Corynebacterium diphtheriae bv. gravis strain 4299 Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 500 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 562 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 626 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 690 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 754 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 818 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 882 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.4 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : GGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATCA # Right flank : CAGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //