Array 1 56332-55108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRN010000016.1 Streptococcus thermophilus strain Moz111 Contig_016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56331 36 100.0 30 .................................... TAATCCTGATAGGAATGTCATTCGATACGT 56265 36 100.0 30 .................................... CATTGTTATTTGTCAGCTGATATTGTTGGA 56199 36 100.0 30 .................................... ATAGCATAGACCCCGACACATTACAAATTA 56133 36 100.0 30 .................................... TTTATCAGCAGATAAATATCCATCTGCTAT 56067 36 100.0 30 .................................... TCAACAAATGTCATTGCTATCTACCAATAT 56001 36 100.0 30 .................................... CGAAGCTATCAAAAGATTGCATCATCTACG 55935 36 100.0 30 .................................... TACAGTTTCTTTACTAGTTGAAACGGTTAA 55869 36 100.0 30 .................................... GATTCCGTTTTCCAAAAAATCAAATCCGAT 55803 36 100.0 30 .................................... TCGGACATTGCAGACAAGGCAGTAGATAAT 55737 36 100.0 30 .................................... CGATAAGTTCATGAGAATGATTGAATTCGT 55671 36 100.0 30 .................................... TAAAATTTTGGCGACAATTCAGCGTGAGTC 55605 36 100.0 30 .................................... GATGTATATCCAAACATGGATCATATCCGT 55539 36 100.0 30 .................................... AATGTCTAGCTTTTTTGCTATCAAAAATAT 55473 36 100.0 30 .................................... GCTATAATGACTTGCTTAGTATGTTTAGTT 55407 36 100.0 30 .................................... AATCAGCAAATAACACTGACAACTATCCCA 55341 36 100.0 30 .................................... CCAAAGAATGGACCATCTTAATGAGAATAT 55275 36 100.0 30 .................................... TTGACAGAACTTTTGAAAGTATGGTTAGAA 55209 36 100.0 30 .................................... ATCAAGGTTGTTGAAGTCGAATGCTATTGT 55143 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCACATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22831-23156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRN010000011.1 Streptococcus thermophilus strain Moz111 Contig_011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 22831 36 100.0 36 .................................... GTTGTTGTTGTTGATTACTTAGTATTGATATATTAG 22903 36 100.0 35 .................................... ATAGGTTATCTCCTTTCTTTTGATTTTTATTACTT 22974 36 100.0 39 .................................... TGCTATACAAATAGCCGTCTTGCATAGACTCAAGTATTA 23049 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 23121 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 96.7 37 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATTGAGGGTTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCATATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 124708-126458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRN010000006.1 Streptococcus thermophilus strain Moz111 Contig_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 124708 36 100.0 30 .................................... AAAATGGATTATCATATATTCATAAAGTGA 124774 36 100.0 30 .................................... AACGCTTCCTAGGTTTAAGCCGTCTTTTCC 124840 36 100.0 30 .................................... TTACACAAAATTGGTTAACGTCAACGACAT 124906 36 100.0 30 .................................... AAATTGTCGTTCATTGCCGTTCAACACCTC 124972 36 100.0 29 .................................... ACAAAGGTTGTTATTACAGTTGGTTTATA 125037 36 100.0 30 .................................... ATTTAAAGAGTTGATTAAGTGCGTTACTGT 125103 36 100.0 30 .................................... AAATGGGTTATGCTGTTCAATATGCGTCCC 125169 36 100.0 30 .................................... AAACTGAAAACAACACAGACAATTCAACAA 125235 36 100.0 30 .................................... GCCCAAAATGCTAGACGTTTGAATGACGGC 125301 36 100.0 30 .................................... ATGAAGAACGTGATTCACCTACGGTATGCT 125367 36 100.0 30 .................................... TTATGTACATTTCAAAAGGTGTCATCCATA 125433 36 100.0 30 .................................... AATACGATTCATTGCAAGAGTATGTTAATG 125499 36 100.0 30 .................................... AATATGAAATCACAAGTAATGAGCCTAGCA 125565 36 100.0 30 .................................... CAAAACATTACAAGAGACTACTTTTACAAT 125631 36 100.0 30 .................................... AGAGACGACCAAAGGAAGTTTATGGATGCC 125697 36 100.0 31 .................................... CTAATGTATATCTCTCAGGGTGTGATTCACA 125764 36 100.0 30 .................................... TTCAGTATCGTTGACTTCATTTCCCAAACG 125830 36 100.0 30 .................................... GAACTATGACGAACCACTAGACAAGAAGAA 125896 36 100.0 30 .................................... AACCCACATGTATCTTGATGATTTCATTTA 125962 36 100.0 30 .................................... AGGGATTTGAAAGTAAAGCAAGGCGCTATG 126028 36 100.0 30 .................................... GTAGTCTTTACTTTCTCAGCTACGGCATCG 126094 36 100.0 30 .................................... GGTACTACACCTCAAACGGTGAGTGCATGG 126160 36 100.0 30 .................................... CGTAATTATTAAATTAAAGGAGGAAACAAC 126226 36 100.0 30 .................................... ACTTATCATCTTAAGTTTTTAGTGGGAGGA 126292 36 100.0 29 .................................... TGGCGCAATGGTTTTAAATCATATGCCTT 126357 36 100.0 30 .................................... GGCTTAACTCGGTTACGAATGTATCATTGT 126423 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //