Array 1 467428-468309 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYP01000001.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2817 NODE_1_length_648386_cov_4.96946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 467428 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 467489 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 467550 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 467611 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 467672 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 467733 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 467794 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 467855 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 467916 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 467977 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 468038 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 468099 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 468160 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 468221 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 468282 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 484579-486622 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYP01000001.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2817 NODE_1_length_648386_cov_4.96946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 484579 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 484640 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 484701 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 484762 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 484823 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 484884 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 484945 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 485006 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 485067 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 485128 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 485189 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 485250 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 485311 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 485372 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 485433 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 485494 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 485555 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 485616 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 485677 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 485738 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 485799 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 485861 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 485922 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 485983 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 486044 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 486105 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 486166 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 486227 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 486288 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 486349 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 486410 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 486471 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 486532 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 486593 29 93.1 0 A...........T................ | A [486619] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //