Array 1 52755-50986 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEUG01000004.1 Acinetobacter baumannii strain C1T1-1 5863_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 52754 29 96.6 31 ............................C CTGCCGTGTCAAAGCTTCTTGTGCAATCGCA 52694 29 96.6 31 ............................A AAACAGTTGGACCGCAGATAATGGAAGTAAC 52634 29 96.6 31 ............................G CCACCTAGCAATGACCCTCTTTTACGGGCGA 52574 29 96.6 31 ............................A ATGACTTGGCTCTGGCTTCGGTTATAGACGA 52514 29 96.6 31 ............................A ATAAAAGACTCGTCCGTCCGCTTGGTAAGTT 52454 29 96.6 31 ............................A CTCAGTAATACAATAAGTATTATCAGGATTC 52394 29 96.6 31 ............................C CCTGAGCCATTAGCTAAAGAAAGCAGCTTTA 52334 29 96.6 31 ............................C TCACTAGACATCTTATTAGCGAGTTCCATCA 52274 29 100.0 31 ............................. CCTGCACCCAATCCCGTTAGCTTTAAAATTC 52214 29 96.6 31 ............................A ATTCACTTTAGTTGTGTTTGACCCTCCTCAC 52154 29 100.0 31 ............................. AGTTCGTCGCCGAGAAGCTGAACGAGCACTC 52094 29 100.0 31 ............................. CGCCCCGGTACTTCCCGACCATGCACCAATG 52034 29 100.0 31 ............................. CTATACGCGCTTGAACCTCTTGCTGAGCGTA 51974 29 96.6 31 ............................A CGTGAAATCTTTGCCTCATTCGTTTCTAGAT 51914 29 96.6 31 ............................A CTTGCATTTACAGCAGCAGTTGTCTCTTTGA 51854 29 100.0 31 ............................. GTTTACGTTCAAAATAGAAATGCATTGCCGT 51794 29 100.0 31 ............................. TTACAAAAAAGCAGCTGCATTGGGCGCTATT 51734 29 100.0 31 ............................. CATACCAGTTCCCAAAGAACAAGGCTTATCA 51674 29 96.6 31 ............................C AAATCATTGCATCATTTGGCTTGGTGATAAT 51614 29 100.0 31 ............................. CCGACTTCGGCACCACCGCCTATTCCAAATG 51554 29 96.6 31 ............................G CCTGATGATGGCTGTAACCGTATGTCTGATG 51494 29 96.6 31 ............................C GTTTTAAAAGACACTCGACTTAAAAGAAAGC 51434 29 96.6 31 ............................A ATGCAGCTTTTCGAAAAGTTCATTGTGTTCA 51374 29 96.6 31 ............................C TTAGTTGTGGCGGCGCGTCAATTGGCTCGTA 51314 29 96.6 31 ............................A TTTTCGGTAAACGGCGCTGCTAACGCCGTTC 51254 29 96.6 31 ............................G CTTTGGTACGGTTATTTGTGCAAAGGATGAA 51194 29 100.0 31 ............................. CTTGCGCTTCACCATCCCGATCGGTTCGGAT 51134 29 96.6 31 ............................A AAAACAAGCCAAAATTGCCACAACTCAACTT 51074 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTGTTG 51014 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 30 29 97.4 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGATACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCAAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGGATGGCGTCTACCACACTAAAAACACAACCATTTGTTTTTCATAAAAAATATAAAACAAAAACACTAAGGGATACAAAATAGGATACAAACTATTAGTTATTGCCTTCTCATCCCCCCCAACCTGTATCTTATCTAAATTGGATTAAAATACTATCTTGTAGCTAATTTCTTCATTAAAACCTTAAAAATTGTTCTTCTAAGTATTCCCAGCTATCCGCTGTCATATTTTTGAATTTCTGCTCTAATTCATCTCTTGAATAATGTTGCTCATCTTGTTTCAAAGTAATGTAATACTTATCTTCACTAGGACTAATTTCAACTTTAACAATTTCAACAGATTCAATCACACCTTCTTTTACTAATCCAACATCGGTAAACATCATCCCTTTTACAGGAATAACAGTGCAATCAAACTCTTTAGAGATATTAAAAATAT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 57845-59191 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEUG01000004.1 Acinetobacter baumannii strain C1T1-1 5863_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57845 28 100.0 32 ............................ TTCCTGAGCAAAACCGAGTGAACCCTTAATTA 57905 28 100.0 32 ............................ TGTGCTTCATCGGCATCAGCCAAAGCAATAAG 57965 28 100.0 32 ............................ AGATGGTCTTGGTGGGCAGGAACCGAGATTTA 58025 28 100.0 32 ............................ TTTTAAATATGTATCAGAAGAATGGGGATTAG 58085 28 100.0 32 ............................ ACTTGCATTTACAGCAGCAGTTGTCTCTTTGA 58145 28 100.0 32 ............................ TACGCAACAGATGCAGCCGAATTACTCATCTT 58205 28 100.0 32 ............................ TACACTTATTTTCTCAAGCGCTAGACTAATAA 58265 28 100.0 32 ............................ AGAAGTCAGTGCGCGTGCTGCTGATCTGGTTG 58325 28 100.0 32 ............................ ATCTTTTGCAAATCCCGATGAACCTTTAATTA 58385 28 100.0 32 ............................ CCGTTCCTCTTACCGCATAGGCATTTACTCCT 58445 28 100.0 32 ............................ TTACTTCAATTGTTCTCAACATTGAGTAGAGT 58505 28 100.0 32 ............................ ATCAACACCAACTACAGGAACAATGCCGCCAC 58565 28 100.0 32 ............................ ATCACACAATGTATGTTCTTCTTTTCTGATAT 58625 28 100.0 32 ............................ AAAAGCGCGTATACGCGAAATGGTGAGCCTGA 58685 28 100.0 32 ............................ TGAATAATAGGTTGCGTTGGTTGAGGATTGTT 58745 28 100.0 32 ............................ ACCACCAGAATCACCTGTAGAAGAACCTGAAC 58805 28 100.0 32 ............................ AATATGACCTTAGCTGAAAAGGCTAAGCTTGA 58865 28 100.0 32 ............................ TGTTGGCGGTGGTGGTGGCGGAACTACAGATG 58925 28 100.0 32 ............................ TGAAGTAAATGAACTGCAAAATGCATTACGTC 58985 28 100.0 32 ............................ AAGAACTTAGCTGAGTTGTATGTATCATCAAT 59045 28 100.0 32 ............................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 59105 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 59164 27 78.6 0 A..T........TC........C.-... | A [59168] ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAATTTTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGTTGTCTACTTAAACGAATCCCGCCCTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTGTTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCAGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGGGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //