Array 1 1261-439 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPK01000102.1 Salmonella enterica subsp. salamae serovar 47:d:z39 strain BCW_1518 NODE_102_length_1278_cov_1.80521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1260 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAGTGATCCACAT 1199 29 100.0 32 ............................. TTTACGATAGTAAAGCTGATTGCGAACAGGCT 1138 29 100.0 32 ............................. TTTGGGTCGTGGTCTGGGTAGAGACACGTTTA 1077 29 100.0 32 ............................. CTATTTACACGAATAGAGACAGGAATGTCCTT 1016 29 100.0 32 ............................. CGGTAGCGCGAGCCTGAATCCGGTTTTCTCCT 955 29 100.0 32 ............................. AGGTTTCTCGACCTCTGGCAATATGATGAAGA 894 29 100.0 32 ............................. GGCGCTACAGTTTGAACGATTTACACGCGGCA 833 29 100.0 32 ............................. GACGAGCTAGAGCAAAATTATTACCAGATGCT 772 29 100.0 32 ............................. ATTTTCAGCGTCGGTTGATGGATGCCGGTGTT 711 29 100.0 32 ............................. GGGAGGCGGACAACGGCTATCTCGACAGCGAG 650 29 100.0 32 ............................. GAATACCGCTGCAACACCTTGTGAATATGGGG 589 29 100.0 32 ............................. CAACTAAGAGGTCTGCCGCTCAAACCATCTAT 528 29 100.0 32 ............................. GTGAAGTGGTTCAATACCTGATCCGCGCCACC 467 29 72.4 0 ..................CT..GTTTGT. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AACCCCGCCGCTGGACG # Right flank : GGGGTTAGTTCACTCCGGCTGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCATCAGCTTCTCATCCTTCCCCGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGTATAATATATGCGACGGAAGTGATGGTGGTGAGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTATGCTTAACGGGGGTAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 916-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPK01000005.1 Salmonella enterica subsp. salamae serovar 47:d:z39 strain BCW_1518 NODE_5_length_168960_cov_2.00531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 915 29 100.0 32 ............................. GATCGAACAAAAAACCTGTGGTCATTGAAACC 854 29 100.0 32 ............................. CGCTTGCTGAGGAGCTGGACGTCTCCCGGCCC 793 29 100.0 32 ............................. CCCTTATAAACACTCCCGGGTGTTCCGGTTGT 732 29 100.0 32 ............................. CCGCTTGCTGGCGAAGACGTGGACACGGACAC 671 29 100.0 32 ............................. TCATCAGATAATGATTGCGCCGCTTTACTGCG 610 29 100.0 32 ............................. CATTTCATTAGTCATTTTCTAGTCTCTCTTGA 549 29 100.0 32 ............................. CGATTTCCCGATGGAGATCACACCCACAGTCT 488 29 100.0 32 ............................. GATAGCAAACACGTCGGCATCAACGATAAATG 427 29 100.0 32 ............................. TTAGAATTAACAAAGAGTGAAGTGGCGCGACT 366 29 100.0 32 ............................. GAGAACCTAACGATATCTCGGCAGCGCGTGTG 305 29 100.0 32 ............................. ATGTTGCCAAAAGGGAGGCCTATGAATGGCAA 244 29 100.0 32 ............................. GCACAGGAATGCCGGATGAATCGTGGATGAGC 183 29 100.0 32 ............................. TAACCTGAATGGATGAAGTTATGAATGTGCGT 122 29 100.0 32 ............................. CTGGTGGACGATATTGTTAGAAACTGGCTTGA 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GTAATCCAACAGTGGAAACCCGCCGCTGGACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49781-50420 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPK01000014.1 Salmonella enterica subsp. salamae serovar 47:d:z39 strain BCW_1518 NODE_14_length_118126_cov_2.07256, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 49781 29 100.0 32 ............................. AATTACTGGTTGGCGATACGGTGGAGTTAACT 49842 29 100.0 32 ............................. TGATAGTTGCTCATATTAATATCCATCTGCCG 49903 29 100.0 32 ............................. CGCCTCGGCCTCCAGTGAGTAGCGCGGGCCGT 49964 29 100.0 32 ............................. CCTGTATATATGACGGTCACGGCACCTGGTAT 50025 29 100.0 32 ............................. GTGCTCGGCGACGCAGACGCATTTGTCGTGGT 50086 29 100.0 32 ............................. GCTGGTTCTGAATTCGTGCAACAGGCAGCGAC 50147 29 100.0 32 ............................. TCACCATCGTAATCACCCTGATAGCCGTCATC 50208 29 100.0 34 ............................. CGGCGTATCTGGGGCCGGACGGCACGCTGCCAGC 50271 29 100.0 32 ............................. CCGATTCACCAGTTCACGCTCTCGATCATGCA 50332 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 50393 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================== ================== 11 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAATTAGTTTATAAACAATGATATACATTTAGA # Right flank : GTTGCATAATCATAATCTGTATACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTAGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67718-68356 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPK01000014.1 Salmonella enterica subsp. salamae serovar 47:d:z39 strain BCW_1518 NODE_14_length_118126_cov_2.07256, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67718 29 100.0 32 ............................. GTTTTTCTGTCGCTGGTGGGTACTGACACGGC 67779 29 100.0 32 ............................. GATTACGTAGCACCTGAAAAAGATTTACGACA 67840 29 96.6 32 ............................T CCCGGCAACCATCCATTTAGTGAGCGCATTAC 67901 29 100.0 32 ............................. GCATCGCCAGTGATACCGGGCTGTTTTCAATA 67962 29 100.0 32 ............................. GCGAACCGGTCGCAGATATGCCGGGATCCGTC 68023 29 100.0 32 ............................. CAGAACACGAAATTCAATTACGACTCGCAGCC 68084 29 100.0 32 ............................. CGTTTATGGCCGTTGTCAGAGCTGCAGAACGT 68145 29 100.0 32 ............................. ACAAAAATGATACCGCCTCTTACATTGGTGCC 68206 29 100.0 32 ............................. GACGGCTACCAGCAATGCTCTGGCAGCATAAT 68267 29 100.0 32 ............................. ATTGCTATGGAAGTGTTGCCACTGACGCCACT 68328 29 93.1 0 ...........................GC | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGTATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //