Array 1 530649-529035 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQW01000002.1 Neisseria elongata strain NCTC10660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 530648 32 100.0 35 ................................ AACCAGCCTGAAGGCGAAGAGTAGTTTAAAGCCCG 530581 32 96.9 33 A............................... ACAATATGGACATGCGCCGTCTAAGCCTGAACG 530516 32 100.0 33 ................................ ATATAAGTCAAGCGGATCACGCGGGACATGGCC 530451 32 96.9 33 C............................... CTTCGGCGGTTTGTAAAAAGACTTTGTTGCAGT 530386 32 100.0 35 ................................ CGTGATAAATCCGAAAAAAACGGCGGCATAAAGGC 530319 32 96.9 33 C............................... GGGCGAAGGCGACGGTCAATCTGATTTGGAAGC 530254 32 96.9 33 A............................... TCCGCGTGCAACCGCGTGCTCCATCAACCTCTG 530189 32 96.9 33 C............................... ACCGAGAAAAAGAAAAAAATGAGAGATAAAACG 530124 32 96.9 32 C............................... CCCTGTCATAACAGATAACGGCGTTAAACAGA 530060 32 100.0 34 ................................ ATATTAAGACGGCCTATTTAAACTCTTTCTCCAA 529994 32 96.9 34 C............................... CGCTTCCTCGCGCCTGTAATCCTCATACGTCTTT 529928 32 100.0 34 ................................ AACAAAAAACTAATCATGATGAACCGCCAGCCCC 529862 32 100.0 33 ................................ GATAATCCTTTGGTTGGGGCGCGTTTTGAGAGC 529797 32 100.0 33 ................................ CTCGGCCAAAGCTTGTAACTGCTACACGCAGCA 529732 32 96.9 34 A............................... TATCGTCATTTTGAAAAGGCCGTCTACATTATTC 529666 32 96.9 33 A............................... AAGCACGAATGCAAGCGGCAGTTTCAGACGGCC 529601 32 100.0 33 ................................ GGCTTCGGCATTACACGCAAGGGCAATGGCTCG 529536 32 96.9 35 G............................... CTTATACGGGCTACTAAGGGATTCAGGCCGCCGCG 529469 32 96.9 33 C............................... ATGTTTCTGGGCGATGATGTAGCCTTGGTACAG 529404 32 93.8 43 G..........C.................... TCGTAAATGCGGCCAAACCACGGCAGGCCGAAGTCAGCCGCCT 529329 32 96.9 34 ...........C.................... ATTAGCTCGAGCGTACTCATCGGTACTTCGCGGC 529263 32 93.8 33 C..........C.................... CATCCGTTGATCCTGATGATTTCGATGTCGATC 529198 32 87.5 35 C..........CG........C.......... GAATTTTTATGCCTACGGTACTTTTGAAGCCATCC 529131 32 90.6 33 C..........C.........C.......... ACTACGGCGGTTTCCTTACCGCTAGAATTGGTG 529066 32 81.2 0 G..........C....A.....A.A..A.... | ========== ====== ====== ====== ================================ =========================================== ================== 25 32 96.4 34 TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGACTGCGGCGCGTGGCAAAGTTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAATGGGTTATTTTAAAAGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCAGCGGTCGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTGGTTCTCATGAAAATGCGACAGGGTTGGCGAACTGGAATTGTTCTTTAACAATCAGGATATTGTGAATGTGGGTGTAACAGACAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAGCCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : GGTCGCCATCTCCTTTTGAAGAGGTATCTTGATCTACGGCGTTCAAACAGCCATAGCCAAAAAATATCCTTGCTAAAATGATCTGCTGTTTTGTCAATATTTGAAGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAAGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGACCATATGGAAATGCCGTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGCAATCATTCTGATAAAATCGTGGACATCAGCCCCATGGGTTGTCAGACCGGTTTCTATATCGCCCTGCTGAACATGGGTGATTATGACGAGGTTTTGCAACTGATTGAAAATACATTGAAAGATGTT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //