Array 1 33798-34472 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MKNX01000011.1 Listeria monocytogenes strain NRRL B-33381 PROKKA_contig000011, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
     33798	    29	 100.0	    34	.............................	TCACTTCTTGATAAAGCTTAATCGATTTTTCCAG   	
     33861	    29	 100.0	    36	.............................	ACGATCTGCCGCACCAAGGACAATATTCGACTGGGA 	
     33926	    29	 100.0	    34	.............................	TTTCGCTTAAAGAAAGATTGTCGTCCATCGTAAA   	
     33989	    29	  96.6	    34	..............A..............	TTTCGCTTAAAGAAAGATTGTCGTCCATCGTAAA   	
     34052	    29	 100.0	    37	.............................	ACTTTGTAAGTGGTATAAACAATTAACGATAACAAGA	
     34118	    29	  96.6	    35	............A................	TTTGCAGGAATCACTTTACCAGTTGTTGTATCTTT  	
     34182	    29	 100.0	    36	.............................	CCCGGAAAGTCTGGGCTTAATAAAGAAAAGAATCTT 	
     34247	    29	  96.6	    37	..............A..............	ACAGTTGCATACTTAGCAATTCTTTTCATGCTGTCCT	
     34313	    29	  96.6	    36	..............A..............	TGAAATGCTTTGATTGCAACCACATATCCATCCCGG 	
     34378	    29	  93.1	    37	A.............A..............	GAAAAAGCACTTTTCAATACTCGTTCGTTTTCTTTTT	
     34444	    29	  82.8	     0	......A........CA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        11	    29	  96.6	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACTATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATAGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC

# Questionable array : NO	 Score: 5.88
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTAATGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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