Array 1 33398-34085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPWG01000020.1 Yersinia pseudotuberculosis strain Y428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33398 28 100.0 32 ............................ AGTGAAATCAATAGTGCCTGTTGCTGTATTTG 33458 28 100.0 32 ............................ GCAATGGATTTGGCTATCCAGACAGCTCAGGC 33518 28 100.0 32 ............................ GGAAACCCGCTCCAGCATTCGAGCGGTCGCTT 33578 28 100.0 32 ............................ GACAGCAAAAGAATACGCAGAGATTAACGAAA 33638 28 100.0 32 ............................ AATTCGCTGTGTCATTTTTATGCCCCTGCATC 33698 28 100.0 32 ............................ TTGAGTGAAAACGAAGCACAGGTACGGTTGTC 33758 28 100.0 32 ............................ AAGAAAGCCGCCTAGCCCCTCCCGCCTTAAAC 33818 28 100.0 32 ............................ TGAGGATATCGCGGGGGCGTTCTTCGGCCTGC 33878 28 100.0 32 ............................ AAACACGTCTCGACCGGTATTCATCGGCATTA 33938 28 100.0 32 ............................ TCCAGTCACTACGTGAGTGAGCGTCGCTAGCA 33998 28 100.0 32 ............................ TACAGCGTCCCCTTTTTGCAGATCTGCAAATT 34058 28 92.9 0 ........................T.T. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGGTAGATACGGCAAACAGTTGGCTGAGATGGTTAACCGTCACCGCGCCTTCTTGACAGAGTAGGTCGACGATGTGCTCACGCCGCTTTAACGTATTCATACGCCAACCTTCAACCTTTGGTTATCCGTAAAGTAATTACAACAAAGAACGCAAATCAGAATTGCCACCTGGCTCACAGTACAAAACTTGCTATAAAAACCCTAAAAATCTTTCGATTAGTCATCAATCGAAAGATTATGCTAAGAATATAAGAATGGATAATGGGGAGTGAAACCAGAAATGGCGGAGTATTCGATTCAGTAAAGGGAAAGAAAGTGAAAAAATATAGGCTAAGGGGAGTGGTTATCGCTTTAAAATCAGCCCGTGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGAATCATTTTTTAACCCTATTTTTTACCCTTTGGCGAAATAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : AGGGTCACTGTCTGTGCGCCAGCGCGGCCCCAGCCTGATCCTCCTGCTGGTAGGCCAACGCCACGACCAGCGACTGTACCAGGCAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCTAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCACGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43279-42531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPWG01000030.1 Yersinia pseudotuberculosis strain Y428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43278 28 100.0 32 ............................ TTGGCGGCAACCTCTGCAAGTGGGATCACCTG 43218 28 100.0 32 ............................ GACATGGGACTGCTGGCCAGTCTCGCTGGGAT 43158 28 100.0 32 ............................ ATAAAAAAAGCCCACAAAGTGTGGGCATTGGC 43098 28 100.0 32 ............................ AGCTAGGTATGTATTCGGCTCCCTATGGCAGT 43038 28 100.0 32 ............................ AATGTTATCATTGATCTCAAAGCAGCGCCGCT 42978 28 100.0 32 ............................ ATTAGCAGCATGATTAGCGGTATGGGTTTGGA 42918 28 100.0 32 ............................ TGCTGCCGGATGCCATTGCTCGCTCTTCTCTG 42858 28 100.0 32 ............................ AAGAACTGACATCAGCTTAAGTCCTTCATATC 42798 28 96.4 32 ..........A................. ATGAAAAAAAAGGAACTTAAGTGGTGGCATAA 42738 28 100.0 32 ............................ TTAAGAGCCAATGCAACACGATCACGCTCTGC 42678 28 100.0 32 ............................ ACGAGATAATCAAGCATGTATCTCTTGCCATC 42618 28 100.0 32 ............................ ACGGTACAGGGCATTAAGCAGGTAGGGTATGC 42558 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGCAACCAGAAACAAACTGGTACAGCAGGCAGTGGAGAGGGTGAATCCCTATTTTAATAAATAATATTAAGGGGCAATATCGGCCCTATTTAAATATATTTTTTATAACAACGAACAGAACCAGCAACATAATAAATCCGATGATCCCAAAAATAATACTAGTGTTACTGTCCATATGCATATTGCCTTTACCGGCCAATAGGTAAGCAGCAACGACAAAGGGAATGCAGAGAGCGGGGTGGATGGTGATCATCACGGCAGCGAGAATTAGGCATACTATAAAGATTGTAGATGTCATCGATCTCTCGTTTTGAGTTGAATTTCAGGGGCAATTTAGGGGCAAATTACAAGTTCAGGGGCACAAAAAAGGGCAGTAAACAGGTAAGTTACGGTGGCTTAAGGTTGATAGCGTTAGCTTGCAACACATTGAAATAAAATAATAAGATATGAAATTCAAATACTTTCATTTCATTGTGTAGCTTATCCGTATTATCTTACT # Right flank : TGTACGTCGCCTTACGTTAGTTGGGGAGTGGCTTCTGGCGTCGGTGTGGTTGTTTTAAAATGATCCCTTTATTCTGAGTGTTTTTGCTTTCTATGGGCCAACTAACTTGAACTGTGCCAATCATAGACAAGACACCTTGCGGTAATACACTACCATACGTGAAGTTACTAGCACTTACGCGAATTTAAAACCGGCCACAGCACATGATGAGTATGGGGGTGTGTGAGTAAGGCGATAAAATACAGCGCCGGGCTTTCTTGCCCGGTGTGAACAAAACCGCCTCTCATGGGGCAAACCAGACTCTCTATCACAGTTTAAACCTATCTCGCTCTTTGTATTTCGCAATGAGAAATGTGATCAGTGCTATCAATGCGACCAGTAAAAATAGATAGCCTAGGGGGATCAAGAAGAAAGGTTCATGTAAGACACCATCCTCGTCAATATAGCTGCCCGCCAAAGCCTTACTAATAAAACAGCCAAGCCCGGTGAGTCCAAAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22-771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPWG01000023.1 Yersinia pseudotuberculosis strain Y428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 ............................ ATATATACGGCGTCTTCTGCGTCTCTACACCG 82 28 100.0 32 ............................ GGTAACAGATTTGTTGTGGTATGCGAACACCG T [89] 143 28 100.0 32 ............................ TTATTTGGATTTTTTCAAAGGTGATCAGCAGG 203 28 100.0 32 ............................ GTGCAGTTGGTCCCCGCGTTGTGGGGCAACGA 263 28 100.0 32 ............................ GACAGATAGGGGCGGGTGAGAGCACCGTTCGT 323 28 92.9 32 AC.......................... GAGAAAGTCGGTCTCGTGTTCGCCGGCCTTTG 383 28 100.0 33 ............................ GGGCGGTATACGTAATAAATCTTGCCGGGGTCA 444 28 100.0 32 ............................ CTGATGCAGATACTGCGCTACGTGAAAACGTA 504 28 100.0 32 ............................ TCATCCCAACTCATATTCATGTGTTTAGTTAG 564 28 100.0 32 ............................ ATCTAAGCAGGGATACGCCTGTTACAGCGCTG 624 28 100.0 32 ............................ ACCAGCAGCAAACCTCGGCGGTTGGCGTGATA 684 28 100.0 32 ............................ GTAGAGAACAGTGCTAACACTTACACTGATAA 744 27 85.7 0 ...................-A.A.C... | T [768] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATTTACAGCTTCACCGCCCAG # Right flank : ATTCTGGGCCATGCGCTGATACTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACAGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTGTGAGTATTAGAGTAGGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAATTGCATGTATGTTGGCTGCGCTCAATTATCCCAGTCACTTACTGGTGTAAGCGCTTGGGGATTGACTCCACTACTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTCTGGAATAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTGTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGTGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 70853-72923 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPWG01000023.1 Yersinia pseudotuberculosis strain Y428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 70853 28 100.0 32 ............................ ACAATCCTGGAACAATCGTGCCTTGCTCACCC 70913 28 100.0 33 ............................ CGTGTATCCACGCGATCGGTGATGCCGGCTTCG 70974 28 100.0 32 ............................ AGGCTTAGTCGCGCAGCCAGCCTCGTTAGACA 71034 28 100.0 32 ............................ ATGGTGATAACAATCCATTACATCGCCATTGC 71094 28 100.0 32 ............................ TCTCCTCTATTAACTACAGATTGCCCCTGAGT 71154 28 100.0 32 ............................ AAATGCGGTCAGTGGCACTGTTTGCAACTTCA 71214 28 100.0 32 ............................ TCCTCCCACTCCCCGCCCGGCCCTGTGTAGCC 71274 28 100.0 32 ............................ CCTGTGGCAAGTTGCCTTTTGTCTCTTCTATG 71334 28 100.0 32 ............................ AATGTGAGGTATCTATGACCCACTCTCACGAC 71394 28 100.0 33 ............................ ATCACACTGAGCTGCGTAACCATTCGCATACAT 71455 28 100.0 32 ............................ GCTGGATATCAGGCAAGGACAGCATGTTGAGC 71515 28 100.0 32 ............................ TCACTAGCCCCACCAAGAACGGTTAACCCATC 71575 28 100.0 32 ............................ ACAATCGGCAGCATCATGAACGGCGGCAAACT 71635 28 100.0 32 ............................ AAACGGAGAAACCACACTTATCACCCGGTTGT 71695 28 100.0 32 ............................ TGCTCTACGCCGCAGACGGAGGAATGCAAGCC 71755 28 100.0 32 ............................ TAATCCAGTGAAACCCGCCGCACTGCTGATTT 71815 28 100.0 32 ............................ TTCAAGAAGTATGTCGAAGATGCAGGCGATCA 71875 28 100.0 32 ............................ GGGTCTTGTGGTCGATCGATCATGATGGAAAA 71935 28 100.0 32 ............................ CATCAACGACGCTAGCATTCGTTACAACAGCT 71995 28 100.0 32 ............................ AACACTGGCAACCGGTCAGCGGCAACCAACAC 72055 28 100.0 32 ............................ ATTAGCGGTATCTTTGATCGGGCATATATCAC 72115 28 100.0 32 ............................ GTCTGCACCGTACTTGTGCATAGCCATAATTT 72175 28 100.0 33 ............................ CAGATGGAGCCGTAACTTTCCCATGCACTATTA 72236 28 100.0 32 ............................ GTCGCACAGAGGGAGGCATTCACCCGGCTTGG 72296 28 100.0 32 ............................ ACATAGTTAAGGGGTAAGAGGATGAGCAGTTC 72356 28 100.0 32 ............................ TTTGCATCAACGTCTGTGACTGTCGCCATTTC 72416 28 100.0 32 ............................ GCTGATATGCGCTGGGAAGGTGGTACGGTATC 72476 28 100.0 32 ............................ ACCGTGCAAATGTGAGGGTTGTCTCTCTTTTC 72536 28 100.0 32 ............................ TGGTCGGTAACATCAAACTTATCTGCTGTGAA 72596 28 100.0 32 ............................ GACTAAGGATATCGATTATCATCGTATGATGA 72656 28 100.0 32 ............................ CAATGACCGTAGATTTACAGCTTCACCGCCCA 72716 28 100.0 32 ............................ CATTCGAGAGACACTTCCGCATCGTTCGTGCA 72776 28 100.0 32 ............................ ATACTCATAACCATACATCTGGTGAACGCTAC 72836 28 100.0 32 ............................ ATGCCGCTATAACCGAGCATCATTGCAAGGTC 72896 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCGATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTGATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAATTATTTTACAAACAGGATGTTATCCGTATTATCTTACT # Right flank : TTTGCATCAACGTCTGTGACTGTCGCCATTTCGTTCACTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10247-11116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPWG01000041.1 Yersinia pseudotuberculosis strain Y428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10247 28 100.0 32 ............................ TGACAGTGGTGTGGTGGTACAGATAGGGGAAG 10307 28 100.0 32 ............................ TTGCTCTGGCAATTGCAAAGCACGTCATCACC 10367 28 100.0 33 ............................ CCAGGAATTTTCAGTGATGCGTATACAGTCGAT 10428 28 100.0 32 ............................ GATTCCAAGCAGGATCCAGTCAAGATATGTGA 10488 28 100.0 32 ............................ ACTCATAAATGTTGCCATACCGATTAAAGCTA 10548 28 100.0 33 ............................ TTAGTCAAAGGGCTTCGGGAGGCTGCAAGTAAC 10609 28 100.0 32 ............................ ATGCTGTAATAGCGCTGACCACCATTTCTCTC 10669 28 100.0 32 ............................ GCGTATACGTGAACTTCGCAAAGCTGCGAAAA 10729 28 100.0 32 ............................ TCGGTTCGTAGTGAATCATCAGCCAGGCATTC 10789 28 100.0 32 ............................ GAGCCGCCCCCTGCCGAGCGGGGAGGCACAAT 10849 28 100.0 32 ............................ GGCGCACAACTGACGGTAAGGCAGCAGAAAAG 10909 28 100.0 32 ............................ GTTATGGATCTACCCTGTGTTTGGTGGTTACT 10969 28 100.0 32 ............................ TCCAGTCACTACGTGAGTGAGCGTCGCTAGCA 11029 28 100.0 32 ............................ TCCATGACACCGGCACGCGTCAACACAGAAAT 11089 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTAGTGATTCTGATGGCAGTTATATTTGATGCCATCATTTTTATACCTGCAGCGTTAATATTTTACTTCCTCGGAAGGTCAGCCAAAAAGTCTAAGACTGCAAACGTACTCAATAAGCTGGCAGTAGGATCGCTCATTATCGGCACCATATTTGCAATCGTTGTAATCGATGCATTTAGTTAGCCACAGCCATAAATACCTAGCCGCCTACGGGCGGTTTTTTTACGCCTAAATTTCATCACAGCGCGGCCTTGCAAAGTGACTACATAATGTCACTAAGGGATCATCATGGCAGTAAAAGATACGGGCTGGAGAAGTATAGAGCATAATTATGCCGTTTAAGCCTCGATCAGAGAACGTAGTGTTTTGACCCTATTTTTTTAGCCTCTTCTAACTCATTGATTTTATACCGTAGCTACAGCAGGATAAAAAAAATCATTTTTTGCCCTTTAGCTAAATAGTTATTTTACAAACAGTATCTTACCCGTATTATCTTACA # Right flank : AATTGGATAGTCACTCAACTGACAAATTCTGCGTTGCAAAATAAACGTGTGTCAGATTAGGTTTAGACTGCAGTATTTTGTGCTGACCATACCAGATGATACCAGTTGCACGGAAAGGGTATCATCAACGCTATGCCAGATAGATAACATCAGGTAATCTCCCTAGATGCTGGGTGGAATGGGGGGAAAGGGTGTGGACAGAAAATTCATCGAGACACTGAAAACATACTGTGATGATGCTAACCGGGGAGGGGGGCCGCTCTACCAGCGTCTGGAGAAAGGTTTCCGCGACCTGATCACCCGTGGTGAGCTAAAAGCCGGATACGCGATTCCCAGCGAACGCGAACTTTCGGAACGCTTGAATCTGTCCAGAGTGACAGTCCGGCGTGCGTTAAGTGAAATGGCTAACGCGCAGGTTATCGTGCAGCGTCGTGGAGCGAGAAGTACTGTGGCGGGAAGGGTTGAAAAGCCGCTGTCTTCGCTGACCAGCTTTAGTGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33749-33116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPWG01000041.1 Yersinia pseudotuberculosis strain Y428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 33748 28 100.0 34 ............................ TCATTGAGCTTCTCAACAATCCCTTGCTTATTAT 33686 28 100.0 32 ............................ TAACATCCTGAGCGTTTGCCGTGCCGCCAATG 33626 28 100.0 32 ............................ AATCAGTGAGTTTCTATTCCGCAATAACATAG 33566 28 100.0 33 ............................ CGTTACTTGAAGGATGGTTTCCAGTATTTGAAT 33505 28 100.0 32 ............................ TTGCTCTGGCAATTGCAAAGCACGTCATCACC 33445 28 100.0 33 ............................ CCAGGAATTTTCAGTGATGCGTATACAGTCGAT 33384 28 100.0 32 ............................ GATTCCAAGCAGGATCCAGTCAAGATATGTGA 33324 28 100.0 32 ............................ ACTCATAAATGTTGCCATACCGATTAAAGCTA 33264 28 100.0 33 ............................ TTAGTCAAAGGGCTTCGGGAGGCTGCAAGTAAC 33203 28 100.0 32 ............................ ATGCTGTAATAGCGCTGACCACCATTTCTCTC 33143 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 100.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGTACAGATAGGGGAA # Right flank : NNNNCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGTTCGGGCCAGGATCAGGGGTTGGGTTCGGATCAGGATTCGGGCCCGGTCCAACGGGGTCATTGAAGGTACTGTTTAGATACCAGTGATGAGTTTGACTTCCCGTCCCTCGCGCCAAAGTATAATCGTATGCCCCAGCGACAATACGCCCGGACTGAGTAAATTCAGCAGTGGTAGCATCACCGTTCACCGCGATCAATTCAATACCATTGAGGGTCTCCGCACCACTGCCACCAGCATTGGTGACTTGCACATAAGTTTGGCCATCTGCATCACCCTGCACGGTGAAGTGATCAGTTAGTGAACTGTCGCCCCCTAATTGAGTATTCATCACCAACAAACCACCACGACCGTGATAATTACCTGTAATGATCAGCGCTGTGCCAGCGGTCCCCGCCTGTCGAGCAGTAAAATTGCGGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //