Array 1 14110-15458 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPA01000016.1 Chlorobium sp. N1 NODE_17_length_15717_cov_347.971264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14110 28 100.0 32 ............................ AAATCCGATGAGGGCTGATATGATGGCGAGAT 14170 28 100.0 32 ............................ TCAGTGGGGTAGCCGTTCAAGCGCCATGCGTA 14230 28 100.0 32 ............................ TTTGATATCGACCGGAAGACTCTCTGCATCAC 14290 28 100.0 33 ............................ TCGGGAATTTCTTAGAAGATCTCATAACTCAAA 14351 28 100.0 32 ............................ TCAAGTTCGTTCCGCGCAGGAAGGTACCAATC 14411 28 100.0 32 ............................ GTCTGGCGAGACTGCTACTGAGCGTGGGCCAT 14471 28 100.0 32 ............................ TCAAGTTCGTTCCTTGCAGGAAGGTACCAGTC 14531 28 100.0 32 ............................ CCAAGGTTCGGGGTGCTTGGATAATGGTGCGA 14591 28 100.0 32 ............................ ACGCTGACGGAGGCTTATCCACTGCGTGATTC 14651 28 100.0 32 ............................ TTGACGGCGTTACTGCGCCTGATGACGCAGAT 14711 28 100.0 32 ............................ AATATTTCGGAGTGGCCCAACGACGCCGCCGT 14771 28 100.0 32 ............................ TCCGTGCGTTTTATTATCGCCTTCCTCCATCA 14831 28 100.0 32 ............................ TCTCTGACAACCCGACCTGGCGGAACCGGGAA 14891 28 100.0 32 ............................ AAAGCCGATACAGCGAACGGAACTCACACTCC 14951 28 100.0 32 ............................ GGAGTTGTCCACGTCAGCAAGCTCCTCGACGA 15011 28 100.0 32 ............................ TATTCCGTACAGACCAAACAAGCGGAGCGCAT 15071 28 100.0 32 ............................ TTGAGGCTGCGCACATTGCCGTCGCTGAGTCT 15131 28 100.0 32 ............................ TGACGGGCGCCAACATGTGGAACACCATCGGA 15191 28 100.0 32 ............................ TGCCCGATAAGACCGCCTGTTGCGACATTCAG 15251 28 100.0 32 ............................ AACTTGACGTACGCCGACCTGACTGGTGCTTA 15311 28 100.0 32 ............................ AGGAGCGCATACCGGCAAGGCCAAGCATGCCG 15371 28 100.0 32 ............................ AACGGCGACATCATAATCAACACGCAGGAGGA 15431 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGTTTGCAACAATTATCAGGACACATTGCCGCATCAGCAATCCGTGATCATCTGAAAATCGGGAACATTCTCGAGACCCCTGAGACAACAGAAGCGATGACGGTAAGAAGGGTACAATGCAAAAGCAATGTAGAACGACTTCGGCGAAGGTATATGAAAAGACACGGCGCTTCGGAACAGGAAGCACAATCAATCATACCCGAAAACTCTATGAAGCATCTCAGCTTGCCTTATGCCACACTCTTCAGTCAGAGTACAGGACATTCATTTAGGCTCTTCATTCAACAACAGAAAGTCACTACCCCTGTTAAAGGACTCTTTAATTCTTATGGATTAAGCGATCACGCCACAGTCCCAATGTTTTAACCCTAATTTCCGCTTAAGCCGCCACAACATTTAAAATCAATAAGATAGCAACCACTCATCTTGTGATGGTCATTATGATGAATTTGCTGAAAGCCCCAGGTTTTTCAGTGCGTTCGCCATTTGCGCGTCTA # Right flank : TGCTGTGAGTTTAGGCCTTGCATAACCCCGTCTATACCCCGCCACCACTTTATTATTGACCACCCGCCCGCATCGCTTTCAGCACAATGCCCTTTACCAGAGTCAGCATCTCATGCTGGAGCGGAGGGCGGCATTTTAGTGGACCCCGTCCTATAGACAAAAAGGGCCTGAGTTTAAGTTGGAAACCTGCTGGTTATGCAGCGGAAAGGCGCTGCCCCTCTCTTTCATTTAACTCTTCCTGTGGCTCGTTCTTGAGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3036-4281 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPA01000007.1 Chlorobium sp. N1 NODE_7_length_94356_cov_229.124516, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3036 33 100.0 33 ................................. GTGCTACCAAACTGTGCGTAGTTTGTCGTGGTA 3102 33 100.0 35 ................................. AAAGGTCTTGGATTTCAGCGCAAGCCTACTTCTCG 3170 33 100.0 36 ................................. AGGCTGTCAGCAAACCACCTGGCGAAGCGGTCAGCC 3239 33 100.0 35 ................................. CTACTATGACTGCTCCTGCTGGTGGATATGTTTCC 3307 33 100.0 34 ................................. ACGAAAGCCTCCGCGAAAGACAGGTCAAGCCCGA 3374 33 100.0 36 ................................. AACAAGAGCCCAGGCAGACTTTTCATCGCGACCCTC 3443 33 100.0 35 ................................. CTGGGAACTCCATGATATTAGGACCAGTGCTTAGA 3511 33 100.0 35 ................................. AGGTCGTTATGCTTGGTCTGCTTATCTCTATGGCT 3579 33 100.0 35 ................................. TCGTCTCCAGAGGCCCGAATATCTTGGCGGTGGTA 3647 33 100.0 33 ................................. TGACCGTTATCATTGTGTCGGCATTCAATGCGC 3713 33 100.0 36 ................................. AAGGGCATCGGGAGCTTCGAGCTCGACGTCGACGGC 3782 33 100.0 34 ................................. TTGGTGCCATGCATCCTCACCACTGGGTGAAACA 3849 33 100.0 33 ................................. ACCGTGTCTGACCTCGGCACGGCATCGGCTGGT 3915 33 100.0 35 ................................. AGGGTGGGAGGGCTTGCGTGATGAAGTCTGTCACC 3983 33 100.0 33 ................................. ATTGAAGATCGTCCCCCTGTTGAGCGTGTCGTT 4049 33 100.0 33 ................................. TACCCAGAGACCATCAACGAAGCACTGGATAAG 4115 33 100.0 34 ................................. CGCGACTGGCTCAAGGATACCATCCAGGTCAACA 4182 33 97.0 34 .........G....................... ACAGCTTGATGAAATTGCTCTACATCACGAAGTA 4249 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 19 33 99.8 34 GTTGCAACCCGCGCATGCGGGCTACATTGAAAG # Left flank : GGCGCAATGGGGATGACGTCACCTCGCTCGGCTGGGATATCAATGCATTGAAGCAGGGATCACGCTTGGCTGGAAACAAACCGCCGGACAAGGCCCGACACCAGGGTGTTGTTGCGGGTCAATGGCTGGCAGCGGAATCCCTTCCTCTCACCAGTTATCTGCGCCGTGATCGCCGTAAACAGCCTTATCGATGGACGACATGGGGTTTGCCTTTGGACCAGGCTGGCGTACGTGCGGTTGTATTGGCACAGCCGGGTGAGTTTGAGGGAGTCCAATACGAGGCCGATGTGTATCGGAACGGGCAGGTTGGTTACTTTGGACTTGCGCGAACCTTAAGCGGTACTCAAAATCCCGGGAGGCTCGCGCAGGAGGGAACTGCTTATTTTCAATCAGTTTACAGTGGGCATCATCCTGTGTGATTGATAAAGATCTGCTGGCCGAGGAAGGTTCGCGCAAATGGGCCGACTGAGCCAGTAATGACAACTGCTTGGAAAGCAAGA # Right flank : GCTTGAGACGTAGGGGAATCATGAGCCGGCCCGTCGGCTTGAGCCAGCTGTCACGCTCCATGCGGGGGCTTCCCCATATCCTCTGGCGTCACCCAATTGATGTCGCCACCCCAGTACTCATCAACACCACTAGACGGAGCGGCACCCGATTTCGTGTCAAAACAGAAGTCGGAGTCGTCGAGTCTCAGGACTTCGTGTCTTCGTGCTTTCGTGTGAGGCCATTATTTTACCCCGGATTCATCGTTTTTCCTTCTTCTGTTTAAGGAGTTTTTCAGTTTGCTCTAACTCCGAGATCTTCTTGGTATCGGCATGCCTGCCTCGGCGATGCGGCGGTTTTCGTTGTGTCGAACTGACAAGGATTCCTTGACAGTTGCTGTCTCGGACAGTTTCAGCGACAACCTCATGGCTCGCGTTTTCGCCGTTTGTGCTTTGCTAGTCAAGCAACGGTCAAACAAAACTCGCTTTGTCATCATGCCGGCATCGGCAAGTATTTTCTAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCCGCGCATGCGGGCTACATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.40,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 1911-527 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPA01000013.1 Chlorobium sp. N1 NODE_13_length_25154_cov_550.974388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1910 28 100.0 33 ............................ CATCTCCTGCTTCGGAGTGAGCTTATGTGTGAG 1849 28 100.0 33 ............................ TTCACCGCCTACGCCTCCGGATCGACTGGAAAC 1788 28 100.0 33 ............................ TATCGGCTACAAAGGACGTTTCATGCGCAGGCA 1727 28 100.0 34 ............................ CCAGACAGGCGACTCCATATCTGTTTTCGCGATG 1665 28 100.0 34 ............................ CCTCTACACGCTGGATGACGGATACACAAGCCTC 1603 28 100.0 34 ............................ CGGGCCGCGCTACTTGCCGGCGACACGACCGACG 1541 28 100.0 33 ............................ CGAGAGGCTTAGGTCCGACTGGATCATGCGGGA 1480 28 100.0 34 ............................ TCGGCACGACGGGATTACGGTCGAGATCGAGCAG 1418 28 100.0 33 ............................ CTGGAGTACTTATCCTGTCTGTGCTTGGTGGCT 1357 28 100.0 34 ............................ CGGCGAGCAGGGCATCTACCTCTACCCGCAGGAC 1295 28 100.0 34 ............................ TTGGTGTTTAGGATCGGTAGCAGCATCGCCAAAA 1233 28 100.0 34 ............................ CCCCAATCGCTGTTCACTGCCGGAGAAGCGGGCA 1171 28 100.0 34 ............................ TCTGTATGCGATGCTGAAGCTGCTCTATATCACA 1109 28 100.0 33 ............................ ACTCAGCAGCCGTCAATATCGCGCTGAGTGGCG 1048 28 100.0 33 ............................ CAGATAGTGGACGCCGAGGCACAGGTCACGCAA 987 28 100.0 34 ............................ CCGAAGGCGATGTACTGGCTGTCAGCCGGTATGA 925 28 100.0 35 ............................ CGAAAAGGTCGACAGGAAGGAGCTTCTAAACCAAG 862 28 100.0 34 ............................ TGCTTGGTCAGCAGTCCGTTTGCCGGTGTACACC 800 28 100.0 34 ............................ CCTGACGGGCGCCAACCTGACGGGCGCCGACCTG 738 28 100.0 34 ............................ CGAGATTGCGGCTGCACGGGCTGAAGACCGCAGA 676 28 100.0 33 ............................ CGCCGTCCCTCCGTGGGAACCCGTGTCTACCAA 615 28 100.0 33 ............................ CTTTGAACGCATCCACCGTCGTCTGCGCAGGGC 554 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 23 28 100.0 34 GTCTTCCCCACAGGCGTGGGGGTGTTTC # Left flank : CCTCTACAAACACAATCTTTGTATTGACCTCGCCTTCGCACTGACGGAAGCAATGGCAGGGGAATACAACCGGCACAAGGTCGCCACAGAATTCCGGAAACGCGTCATCGCCGCCGACCTTCTCGGCAAAATAGGCCCTGACATTGAATCCATACTCGGGAAATAACCATGCTTGTCGTCATAGCCAATGATCTCCCCCCAGCTGTTCGAGGACGTATGAAACTATGGTTCATCGAACCCAGAGCCAACATCTTCGTTTCAGGCATCAAAGACTCCCTTGCTAAAAAAGTCATAGATTACCTTTATAAGCATTGCCCAGCCGCAAGCGGGATCATTATCTTCAACAGCACCAGCATTACACCAGGCTATGAGATGTATGGCATGGGCGATACCCGTAAGGCGTTGACTGATATTTCCGGATTGCAGCTGGTGATTGAAAAATCAGCCGATTCTCTTTCAAAAACATGCATCCCTCCCTCTAAAGGCCAGTAAAATCCAGT # Right flank : TCTCTGCATCCTTCGCATCGATTCTGCTGGCGTTCAAATTTTGCAGGCACTGCCTGCAAAATTCTAGCAACGAATACGTTAGCACTGTACTCATCAATCTCGCCTTTCGTTTTTCACTCTTCCCTTTGCCCCTGCTGATCCCTCTGGGTCTCGGTCATCCAGTCACTACTGATTTTTAATGGTGGATCAGGGCTTTTCCTTGTCGGGAACCAGTTAGTTTATTACTTTGTTTGTTTATTAGTTTGTTTGTTATTATATTGTTGGAGTCAACAGCAAGCAATATCAAAACAGGAGAGCGTCATCATGCGTCCAGTCGAGTTCACCACGGAAGAGATCGTCAAAGCCGGCCAGGAGCTGCAGGCCGCCGGTCGCAATATTACCGGGTTTGCCCTTCGTCAGAAGATCGGTGGCGGGAATCCGTCACGGTTGAAGCAGGTTTGGGATGAGTATTTGAGCAGTCAGGCCGAAGTCAAAGCTGAGCCGGTAGCCGAGCTGCCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACAGGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21998-21355 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPA01000013.1 Chlorobium sp. N1 NODE_13_length_25154_cov_550.974388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 21997 28 100.0 34 ............................ TTATCGCGGATACGGCGCAGAAGACGGCAGAGCG 21935 28 100.0 34 ............................ CAGCTAGGTATGGGCTTGCAGGTGCAAGCGTAGG 21873 28 100.0 33 ............................ CTTCGGGTTCCGCAGCTTTGTCAGGTCTGCTTG 21812 28 100.0 34 ............................ TAGATGTAGAAGCCCCAACGATAAATGTTACTGG 21750 28 100.0 34 ............................ TATCGTCACTGGCGGAAGCGGAGGAGGCGGAGGT 21688 28 100.0 33 ............................ CGCTGCGCTCAGTTCGCACACGCTGTCTGCCGA 21627 28 100.0 33 ............................ CCATCCGCAAAACACATGCTGAGCGGGTATTCG 21566 28 100.0 34 ............................ CTTCAGCCCGCGACCGCCGACCAGCGGCTTACAA 21504 28 100.0 33 ............................ CACAGAAGGCGAAAAGACTGACCGTGTCGACGC 21443 28 100.0 33 ............................ CTGGAAGGGCGGCCAGCTACGGTCTCCAGGTGC 21382 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 100.0 34 GTCTTCCCCACAGGCGTGGGGGTGTTTC # Left flank : GCGCACCTTCGATACTTCTCGGAACCCAGATGAAGAGGGATCTCGAACCAAAGCCGCCAAAAAGAGCTGAAGCATTTTTCCCGAGAGCGGCGGGCTCTTACATACAAATGAGTTCCGCTAGAACGGAACCGCCGCTCTCGGGCCACTCTTAAGGCTGGCCTACATGAGTCAGTGCTGTTTTAAAACTATATTGATACCAATAAAGCACCAGAACAATGCCCTATTAGAATCAGATCGGGTACTCATCAGTTACTTGCTTAGCGTATTTCATCAAGGCATATCGAAAAAAGTTTTTCTCACTTCGCCCTGTTTTTGTACACACCGCAGAGAGTAACTGGGCCTCATACTCGTTCAAGGGCAAGGAGATCGTTTTGAACTTGCGAGGAGCGTTAGGATTCAGTGGAGCCTGGACAGAAACTTCAGGCCGCAGGATAAACTCATCTAGTGTGGGCTTGATCGGCTCTTCGGCCCGGGGACGTGGTTTAGCTATTGCTCCTTTA # Right flank : TCTCTGCATCCTTCGCATCGATTCTGCTGGCGTTCAAATTTTGCAGGCACTGCCTGCAAAATTCTAGCAACGAATACGTTAGCACTGTACTCATCAATCTCGCCTTTCGTTTTTCACTCTTCCCTTTGCCCCTGCTGATCCCTCTGGGTCTCGGTCATCCAGTCACTACTGATTTTTAATGGTGGATCAGGGCTTTTCCTTGTCGGGAACCAGTTAGTTTATTACTTTGTTTGTTTATTAGTTTGTTTGTTATTATATTGTTGGAGTCAACAGCAAGCAATATCAAAACAGGAGAGCGTCATCATGCGTCCAGTCGAGTTCACCACGGAAGAGATCGTCAAAGCCGGCCAGGAGCTGCAGGCCGCCGGTCGCAATATTACCGGGTTTGCCCTTCGTCAGAAGATCGGTGGCGGGAATCCGTCACGGTTGAAGCAGGTTTGGGATGAGTATTTGAGCAGTCAGGCCGAAGTCAAAGCTGAGCCGGTAGCCGAGCTGCCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACAGGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //