Array 1 258019-259267 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGU01000039.1 Escherichia coli strain 634 BN4_634_1_(paired)_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 258019 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 258080 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 258141 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 258202 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 258263 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 258324 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 258385 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 258446 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 258507 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 258568 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 258629 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 258690 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 258751 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 258812 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 258873 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 258934 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 258995 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 259056 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 259117 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 259178 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 259239 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284967-286825 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGU01000039.1 Escherichia coli strain 634 BN4_634_1_(paired)_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284967 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 285028 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 285089 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 285150 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 285211 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 285272 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 285333 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 285394 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 285455 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 285516 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 285577 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 285638 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 285699 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 285760 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 285821 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 285882 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 285943 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 286004 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 286065 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 286126 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 286187 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 286248 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 286309 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 286370 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 286431 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 286492 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 286553 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 286614 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 286675 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 286736 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 286797 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //