Array 1 54-327 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCM01000023.1 Bifidobacterium longum subsp. longum strain MC-42 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54 29 100.0 32 ............................. TCGTCGCGTCCCCTGAAGTCCCCTAGTACTGG 115 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 176 29 96.6 32 ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 237 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 297 29 82.8 0 ............C......T....CG..C | AC [319] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ACCCGCAACAACTAATTGAACACAAACACACCGACCCTGGCAAGCCGCTGGTAG # Right flank : CCGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTACGCGTCCAGTTCGTTCTTGAACTCCTCGTACGAGGCGAACCGGCGGCCGGTGTGGAACTCGTCCTTGAGGTGGCCGAACACCTGCTCGGTGGCGGCGTTGTCGATGCAGTTGCCCTTGCGGCTCATGGACTGGCGGATGCCCAGTTCCCCGAGCCTGTTCCGCCACCAGTCGTGCTGGTATTGCCATCCCATGTCGCTGTGGAGTATGGGATCGGCGCCTTCGGGCAGCTTCTCCTCGAGCATGGCGAGCAGCCGTTGCTGCTGGGCGAGGTCGGGGTGCCGGCTGACATCCCAGGCCACAATCTCCTTGGATCCCATGTCGTATATGGGCGCGAGGTACGCCTTGCCGCCCGCCGCCCTGAACTCGGTGACGTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1845-2419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCM01000023.1 Bifidobacterium longum subsp. longum strain MC-42 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 1845 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 1906 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 1967 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 2028 29 100.0 32 ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 2089 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 2150 29 96.6 91 .......................A..... GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 2270 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 2330 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 2391 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 9 29 93.5 39 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : TTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAACCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGGACGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : AGACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATAACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 92319-92669 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCM01000029.1 Bifidobacterium longum subsp. longum strain MC-42 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 92319 27 70.4 45 G..C....C.....C...GCC....C. ACGGGAACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 92391 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC GAA [92395] 92475 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 92535 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [92583] 92583 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 92640 27 81.5 0 C.............C.....C....CG | GC,C [92657,92661] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 37 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCAATCTTCTCAACCGGG # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 199487-207761 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCM01000007.1 Bifidobacterium longum subsp. longum strain MC-42 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 199487 29 100.0 32 ............................. GCGACAGCATCGACGTTCTGACGCAAAACCCA 199548 29 100.0 32 ............................. TCCGTGCGATTTACGGAATTTCCAACCGCCGA 199609 29 100.0 32 ............................. GTGATTTTGCTCGATACGCGACTCATGCCAAT 199670 29 100.0 32 ............................. GTGGCCGGCCATGGCACGCAGATGGACAAGTT 199731 29 100.0 32 ............................. ACTTGGCGCGGGGTCTTTTGGGCGTCGGCTGT 199792 29 100.0 32 ............................. GGAGTGTTTTCCCAAACAGCTTATCTACGACA 199853 29 100.0 32 ............................. CTCATGGCGTCAACGGAACGCAAGGGTGCTGA 199914 29 100.0 32 ............................. ACGAAACGAAAAGTCAGAAACGGGATAGAACG 199975 29 100.0 32 ............................. AACACCGCTGACAACGCGCTTGAGATGGCGCA 200036 29 100.0 32 ............................. GGCTGGACACCGGTAGCGAAATGGTGACGGTA 200097 29 96.6 32 ............................T AAGGCGGGTGCAAGCGAGATTGCTCCTCTTGA 200158 29 100.0 32 ............................. TTGGGCTAGAGTGGCCTCCGGTTCCACTCCGA 200219 29 100.0 32 ............................. GCATTTGCGCCGTGTACATGGTGCCGAAAATC 200280 29 100.0 32 ............................. TCGATTCGATGGCCCGACCGTAAGGCAAGTCG 200341 29 100.0 32 ............................. TACATCATCGCCGCTCTGCACAAGGCCACCGA 200402 29 100.0 32 ............................. TGTGGTGCCTGAACCACAGCGGCGAAACATTG 200463 29 100.0 32 ............................. GTGCCGTTAACTTGGCGTTTCTGCCGGTGGTG 200524 29 100.0 32 ............................. TCGCGTCGGCTTCGGTTGGCGTCCGGGTGATC 200585 29 100.0 32 ............................. TGTCGTCTCCATCTTGACGGTGGCATAACGCC 200646 29 100.0 32 ............................. GCCGGTGACGCTATCAATTCACCGTGCCTGTA 200707 29 100.0 32 ............................. TTGTCGTTATCCTCGGTGTCTGTCGAGGGTTC 200768 29 100.0 32 ............................. ATCACGTTCATCGACCCGGACGGCGATTACAG 200829 29 100.0 32 ............................. GCCTGCATGCGCCGCGATGTAATCGGGGTCCA 200890 29 100.0 32 ............................. GTCTGCGGCGCTCATGCGGGTGAAACCGACCG 200951 29 100.0 32 ............................. GCGTCGGCCTCGCCTTCGCGCCCCGGCTGCAG 201012 29 100.0 32 ............................. ACAGCGAAAGCGTCCGACGGCGCGCTTGAGTT 201073 29 100.0 32 ............................. GTCAGATAATCGCCTCGTTGCACGGTGTACCA 201134 29 100.0 32 ............................. GTAAAACGTGTCCCAAAACCGGCATACCACGT 201195 29 100.0 32 ............................. GACGCAAACGGCATCGTCCGCGTCGGCCACAC 201256 29 100.0 32 ............................. TCGTGTGCGTATGCGTCGGCTGTTTTGAGGCC 201317 29 100.0 32 ............................. TTGTTGGTGTGGTCGTAGCTGTTTACCATGAT 201378 29 100.0 32 ............................. TGCCGGGAACCAATCACGCCGGATGTCCCGAC 201439 29 100.0 32 ............................. ATGCAGTTTGGCGTCCGTGTCGTATCCGAACG 201500 29 100.0 32 ............................. TCCTGAATGCGATGAGGGCGGTGGACGCTGTA 201561 29 100.0 32 ............................. GAACGGACGTGGCCACCCCGTCAAACAGGCGT 201622 29 100.0 32 ............................. GCCGGCGCCGACATGAAGGAGCTGAAGGAGGT 201683 29 100.0 32 ............................. GACGTGGCCTCCATGGGACAGAAGCTCGCCGA 201744 29 100.0 32 ............................. ACCATTGCGGAGATCCCGAACTCGCCCGTAGT 201805 29 100.0 32 ............................. GACTCGAAATGAACACCAAGGATTACGGCCAT 201866 29 100.0 32 ............................. GATACCCCAATGAGTGCGCCGATACCAAACCT 201927 29 100.0 32 ............................. GATGTGAGTCTCGCATCAGTCAGACAACAGTA 201988 29 100.0 32 ............................. ACGTTGCTCAAGGCGTTGCGTGCGACCGCCGG 202049 29 100.0 32 ............................. ATTCCACCGAGCATGGCGGAGGTGCGCTGATG 202110 29 100.0 32 ............................. GAAGCCGCTGATGATGCTGGAGCCTGCGTCGT 202171 29 96.6 32 ............................T GCGATATTCGACAGCATCCGAGCGGAACGTGG 202232 29 100.0 32 ............................. ACATCCAGTCCGATAATCTTACCATTCGAGAA 202293 29 100.0 32 ............................. TGGCCGCAGAGCTCGCCAAACGACTCAACGAC 202354 29 100.0 32 ............................. GAGAGTTAGGCAATGAATAGCATAGCATGGAT 202415 29 100.0 32 ............................. GGCTTCCGCAGCGCGGTCGACAAGGAGATGCG 202476 29 100.0 32 ............................. TTTCGTGATATGCACATCGGGGACGACCTGAT 202537 29 100.0 32 ............................. GGCAAGAGCCATGTGACCGGGCGCAGCCAGAG 202598 29 100.0 32 ............................. TGGCCGCAGAACTCGCCAAACGACTCAACGAC 202659 29 96.6 33 ............................A GACGCGGCATGCTTTTCGCGTCTTCCCGTGGGA 202721 29 100.0 32 ............................. CTCGCCATGTACGGCGGCGGTACGACCACGCC 202782 29 100.0 32 ............................. TTGATGACCTTAACCGTGTTCAGGTTGTCTTG 202843 29 100.0 32 ............................. CACACACACGAACAAGACAAGAACAGGACCGA 202904 29 100.0 32 ............................. CCGAAGAGCGATTACACGTATATCTCGCCTAC 202965 29 96.6 32 ............................A CTTGGGGCATGGAAAAACGACCACACCTACGA 203026 29 100.0 32 ............................. GAGCTTTCGACCGTGCCTATCACATAGAGCGC 203087 29 100.0 32 ............................. GTTCGCCACGCTTCCACCCAGTCGGAGGCGGA 203148 29 100.0 32 ............................. GATGCCTGAGCATCGAGAACACCGCGTCATCG 203209 29 100.0 32 ............................. GGGGCGACATTGACGTGTTGACCCAAAACCCA 203270 29 100.0 32 ............................. ACCAAGGTCGAATACGCGGACCTCGTGGAAGT 203331 29 100.0 32 ............................. GCGTCCTGTACCACGCGGTCACAATCGGGGTT 203392 29 100.0 32 ............................. GTATGTCACAACGGCGGCAGCAACACCGCAAC 203453 29 100.0 32 ............................. TGATGAGGAATGCGGCACGTTCAACGCGCCTG 203514 29 100.0 32 ............................. AAGCGCCCGGCATGGCATATCATGGGGTACTT 203575 29 100.0 32 ............................. TTATGGCGCCCAGTGCTGGGACTTGTGGGCGA 203636 29 100.0 32 ............................. GACGCTGTCCGCTAGATCGGGGCTTCCGGTCT 203697 29 100.0 32 ............................. GAACCGACGAAGAATTCACCGAACGCTATCGT 203758 29 100.0 32 ............................. GGTGATTATGCGTTCCGCAGTTTCGACAAGAC 203819 29 100.0 32 ............................. TGGCGAAGATGTGGGGCAACGCCTTCTGCTCC 203880 29 100.0 32 ............................. GACGTCTGCATCTACAGCGTGACGGCTTACTA 203941 29 100.0 32 ............................. GTGCATCTTGATAGCATCCCGTCCGACGAAAC 204002 29 100.0 32 ............................. AACAATGGTTCGACAAACTGGATGGAGTGGAA 204063 29 96.6 32 ............................T GACCGGAATGTCAATCAGGAACTTGTCAGTAG 204124 29 100.0 32 ............................. TGCCCACGGATGTTGAACGTGCCCCATACACC 204185 29 100.0 32 ............................. CGGACAACTGACCGATGCTCCGAAGCCGCCCC 204246 29 100.0 32 ............................. TGCTGACGCTGATTAACTCCACTTACGGTACC 204307 29 100.0 32 ............................. ACTGTCGGTATCACCGCCCGTGACGGTAACGC 204368 29 100.0 32 ............................. GACGTGATGAAGGCGCTCGTGGCCCTCAAGGA 204429 29 100.0 32 ............................. GAGAATCTCTACTGGGGTAGCACAGTTCAGGA 204490 29 100.0 35 ............................. AAAAAAGAACCGCCGAAACCCTCAACAAGCTGCAG 204554 29 100.0 32 ............................. CCAGTGGGCGGGCATTCGATGGACGTTCCCCT 204615 29 100.0 32 ............................. CGGGCGGCAAGCACGCACGAATAGGCGTTCAG 204676 29 100.0 32 ............................. CACAGGCTTGCCACGATGTCGCTTATGAAGTC 204737 29 100.0 32 ............................. GCGTAGGCGTCTACCACTTCGCGCACACGGAA 204798 29 100.0 32 ............................. CAACCGAAGGCATCGGATACGTCAACCCCGAT 204859 29 100.0 32 ............................. CACTACACGCCGGGCCGCGCCGGCCACCGCAT 204920 29 100.0 32 ............................. ATCGCGTGCCATCTGCGACAGTTGGCACCGCC 204981 29 100.0 32 ............................. CTCTGCAAAATGTTCGATGGACGTAAGGCGCT 205042 29 100.0 32 ............................. AGGGAAGTTGTAGCGGCTTGTAGTAGGCGAGA 205103 29 100.0 32 ............................. TACGCCAATTGCCTGACCATCGCGCAACGTCT 205164 29 100.0 32 ............................. CGGTTTCAACGTGTTTTCTATAAACGCGCGTT 205225 29 100.0 32 ............................. TACGTGCTGTCGGCGTTGCCCTCGGTCGAGGT 205286 29 100.0 32 ............................. CTCGCCCATAACGACGGCACCGTTCGCACCGG 205347 29 100.0 32 ............................. GTTGCCGATGGCGTCCACAGCCATACCGATAC 205408 29 96.6 32 ............................A CCTATGGTCGATCAGATCACCCAAATGCTTGA 205469 29 100.0 32 ............................. CTGAGCGGTCACGTTGCGAATATCGCTGATAC 205530 29 100.0 32 ............................. TTCCCTGTGTACGCGCCGTTTTTCAGCATCGC 205591 29 100.0 32 ............................. GGCACGACCATAGCGTCTATGGCGATGACCGA 205652 29 100.0 32 ............................. GTGTTCATCCACCTTATCGGCGGTCTGCATGG 205713 29 100.0 32 ............................. CATTCACATCACCGTAGAACTTGTCAAGGTCA 205774 29 100.0 32 ............................. TTCGCAATGGTCATGACGTCTTCGTAGCGTAA 205835 29 100.0 32 ............................. GCGGCTATGGGTATCGCCGGCATCGGCGGTAA 205896 29 100.0 32 ............................. GTGCGAACCATTGTTTTTGATGAGATTTTTCC 205957 29 100.0 32 ............................. TGGCCACGGATGTTGAACACGCCCCACACACC 206018 29 100.0 32 ............................. ACCATCGCGCCGAGTTGAACGAGAAAATCGTC 206079 29 100.0 32 ............................. TTCTGAAGCTGGGAGCCCACCAGCGTGGCGAA 206140 29 100.0 32 ............................. ACGGACGCACCACCGTCATACCCAAGGTCGAC 206201 29 100.0 32 ............................. AGTCGCCGTGGATTTAAATTCTTTGACCTCGA 206262 29 100.0 32 ............................. AGGTGAGTATGGACGACACCGAAAACAATGAG 206323 29 100.0 32 ............................. CGGGGTTGGCGAGCGTCTTGTTGAGGAACGTG 206384 29 100.0 32 ............................. GAAAACCCTCTCGAAATCTAGTTGTTCCCGTT 206445 29 100.0 32 ............................. CGTCCTCCTTTCCATTTCTCTGGTGGGATTGG 206506 29 100.0 32 ............................. AGCAAGGATTCCGACAGGGACTGACCCGACCC 206567 29 100.0 32 ............................. ATCAGCCGGATCATCGAGAACGCGCCCGAGGA 206628 29 100.0 32 ............................. TGCGGCGTTGGTCAGGCCGAGCAAGAGCACGA 206689 29 100.0 32 ............................. ACGACCGGCTGGTGGCATCACGCGCTGGTGCG 206750 29 100.0 32 ............................. ATACGGTCGGGGTCGGAGTCGGTGTCCTGCTC 206811 29 100.0 32 ............................. TCGTTGTCTGAAAGAATCGAATCCAAACCCAA 206872 29 100.0 32 ............................. GCGGGTGCGGCTGTCATCACGCTCAAGGCGGG 206933 29 100.0 32 ............................. AACGTGCCGAGGTTCGTGAGGAATTGCTGACC 206994 29 100.0 32 ............................. CATCACAGGATTACACGGCGACGGTGGATGCC 207055 29 100.0 32 ............................. ACCATCAACATACATGCGGACGGGACCATGAC 207116 29 100.0 32 ............................. CATGCGAGCTGCGCTTCGCCGGCACGCTGTTG 207177 29 100.0 32 ............................. CCGGCGCGCCCGAAGCCGACGCGACCGGACTG 207238 29 100.0 32 ............................. GCTGGGTCGCGGGCCGCAACATGGACTGGGGC 207299 29 100.0 32 ............................. CGTTGCCGTCCAAGCCCCAGCGACTTCCGCTG 207360 29 100.0 32 ............................. CACTGGAGTTCGTGGACATGGACGCGGCCGAC 207421 29 100.0 32 ............................. AACGAGCCGAACAGGGAGCCGATCTTACCCAA 207482 29 100.0 32 ............................. GATATCGTGCAGGACACGAAGTGGTTCGCGTA 207543 29 100.0 39 ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 207611 29 100.0 32 ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 207672 29 100.0 32 ............................. ACGTGGCTCCCGAGGCTCGCGTGCATCTCAAC 207733 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 136 29 99.9 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : ATGAGGTCACCGATGTATTTCGTCAAGTCGGTGTTTCGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //