Array 1 38313-39178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTXB01000025.1 Pseudomonas aeruginosa strain AZPAE14704 AZPAE14704_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38313 28 100.0 32 ............................ GGGCAATGATCCACCGCGAGTTGCCCCAAGCG 38373 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 38433 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 38493 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 38553 28 100.0 32 ............................ AGCTCGGCCAGCGCAGCCCGGCGCGCTTCGCC 38613 28 100.0 32 ............................ TTGCCCGCTCAGCGCTCAGGAACGACTGACCC 38673 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 38733 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 38793 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 38853 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 38913 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 38973 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 39033 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 39092 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 39151 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48874-47703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTXB01000025.1 Pseudomonas aeruginosa strain AZPAE14704 AZPAE14704_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48873 28 100.0 32 ............................ ACAATATCCGGGAGTTCAAGCCGGATCATCCG 48813 28 100.0 32 ............................ ATCACCCGAGCCATCACCATTGCCGGAGCCAT 48753 28 100.0 32 ............................ TCGGTGTTTTTCGCGGTTTATGTCGGTCGATC 48693 28 100.0 32 ............................ CGGACCCGAATCCTGATCCGCCGGATCAGCCT 48633 28 100.0 32 ............................ CTGCACCATGCAGTGCCGGACGGATACATGCT 48573 28 100.0 32 ............................ TTCGGGAAAACGCCGTGCTCAGTAATTTCAAG 48513 28 100.0 33 ............................ TATGCGCCCTGGTGGGCCTTGAGCCGACTGACT 48452 28 100.0 32 ............................ TTGCTCAAGGCTTGGAACACTGGCCACCCCGG 48392 28 100.0 32 ............................ CTGAAAATGGCGCAGGAAACCGAGGTGGCCAT 48332 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 48272 28 96.4 32 A........................... TTGTCGGCCACGCGCAGGTTCTCCACGACGTT 48212 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 48152 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 48092 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 48031 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 47971 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 47911 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 47851 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 47790 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 47730 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //