Array 1 122030-123643 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOU010000001.1 Aerococcus urinae isolate Au-08-B04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122030 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 122091 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 122152 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 122213 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 122274 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 122335 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 122396 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 122457 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122518 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122579 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 122640 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 122701 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 122762 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 122824 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 122885 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 122946 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 123007 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 123068 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 123129 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123190 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123251 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123311 29 96.6 32 .C........................... GGGAGTCTGAAACTCTATACCTTAAAAAGACA 123372 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123433 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123494 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123554 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 123615 28 75.9 0 ......-....C.......T.T.A...TG | A [123633] ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGGTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142593-143412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOU010000001.1 Aerococcus urinae isolate Au-08-B04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142593 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 142654 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 142715 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 142776 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 142837 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 142898 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 142959 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 143020 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 143082 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 143143 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 143204 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 143265 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 143326 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 143386 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //