Array 1 12505-12664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMLH01000067.1 [Clostridium] saccharogumia DSM 17460 BR82DRAFT_scaffold00065.65_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 12505 25 100.0 39 ......................... TTGAAATAAAAAACATCCCCTTTTATTTTCAAAAGTGAC 12569 25 100.0 46 ......................... AATAAGCTATGATGAACCAATAGAAAGGTGATCTATTAAGAGTGAC 12640 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 3 25 100.0 43 AATTCCTCATTAGATAAGGTGCAAC # Left flank : CAATCACAAAATCAAACTCATTTTCCATCTTTGATAACTCTAAATACTCATTGATCAAATCAATTGACGATGACGAAGCCACCGCAATTTTGATTCCCATTTCTTTTAAATAAGCTACCAGCTCTTTCAACCCCTTTTTGATTGGTAAGCCATATTCATAAAAATACTCCATTTTTAACTTCTTTGCTAAATCTCTTATCTCAAATACCGGATAATCATCACCAAACTTAGCCTTAACCTTAAGAACATGATCATGAACATTCATCCCTATCAATCCCATCTGAAATTCATCATCAACTATATAACCATACTTTTTAGCCGCTATTTTAAAACACTTTGCCCCAATCGGTTCAGTATCAAACATCAACCCATCCATATCAAATATTACTGCTTTTAACTCCATTTCCTTCCTCCACAATAAAAGAGCGTATATACGCTCTTTTATCTTACTACATTATTTTAAATAAAACAATTATCACTAATTCTTTAAATAACTTATT # Right flank : CAACTATATTTACTAGCTATTTCTTATATCTTACTATAAATTTAACTATTTTTAAACATTTTATGAGTGTTTTTTGTGGTCAATCTCTAAATTACTTATTTGTGTATAAGTGTTGTGTATCATAGGGTTTGAGCATTTTTTGTGTTTTTAATGAATACCTTTAAAAGATTGACTGTATTTTTTGCTTATTTTTGATGATTTTTAGCTGTTTTTTGATTATAAAATTGCTCAAAAGTCTTGATGAATATAGAGTTTAGATTGACCGCAAAATATTACTCTAAACTCATTACTAAATAATATATGCGCTTTCGTTTGTTATTTTTAATAAAATGAGTATTTGCTAATTCCTTTAATTTAAATAACCTATTAATTCTTCAACCAGTTGATACACAGTGTTCCCTGGAGAGCATTTTGAGGGAGAAAGACTTGGTTTATAATTACTCATAAGTCTTTTAGAATTACCTATAGCATTTTTAACACTTCCAACTTCACTACAAAAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTCCTCATTAGATAAGGTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [86.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 4465-5284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMLH01000070.1 [Clostridium] saccharogumia DSM 17460 BR82DRAFT_scaffold00068.68_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4465 30 100.0 37 .............................. ATCTGTGGTAAAACATTTTTTTCTACCCATGGTTCTA 4532 30 100.0 36 .............................. CCTCTTTTCTCTTTACAAGAATATAATAATTCATTT 4598 30 100.0 35 .............................. CATCGAATTAAAACAACGTTTAACGTTGGTGAACT 4663 30 100.0 36 .............................. ATCTGCTGGTTCTGGTGCTACTGTAATTAATATAAA 4729 30 100.0 35 .............................. TATTGAAAGACCTGAAAATTTTGAAAGTGCAATTG 4794 30 100.0 35 .............................. GCGAAAGAAAAAAATATATTATTAAAAAAAATTAT 4859 30 100.0 34 .............................. TTCTAAATCATTAACAAACTTTGCCAACGATTCC 4923 30 100.0 34 .............................. TTCCATATAAGTCCATATGCACGAAGAGGAAGAG 4987 30 100.0 37 .............................. TTCTATTAGCTCTTTTTTGTTAAAAAATGGAAATCCA 5054 30 100.0 37 .............................. TCTTTCTTCACTAATTTCAATTGTGTTTCAACCGGTC 5121 30 100.0 37 .............................. TAATATTCTTGTTGAACATTTTCATATTTATATTCAT 5188 30 100.0 37 .............................. ATAAGAAGTATGCAAGTCGTCATTTTCTTGATGACAA 5255 30 76.7 0 ........T......G.A..A...AA...C | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.2 36 GTTTAATAACAACATAAGATGTATTGAAAT # Left flank : GGCAGTAAGTGATATGGTTGAGCATTCAATTATAAGTATTGTGGCATCAAAAGAGGGTAAGGAAAATAAGTTTAGAGTTTGTTAAAAAATATTAATTTTGAATAATTTATGTTTTTTGTTACAAACTATTATTGGGGTGATAATATTGAAGAAAAACAGAAAACAAACTAAATCAACTGAAACTCAAAAAACTGCAGTTAATAATCAATGGACAAATAATAATACAAAATATTATCCAGATAATAGGGAACGTCAAGATGGTCCAGGTGGTAATTAAGAAACTTTATTAATTTAAAGTTTCTTTTATTTATAACAAATAAGAATTATTTTACCAGCTACAAAATTTAATAAATTGCTTAAATCCGTTGGTAGAGTAAGAGTTTAAGAGATTTAAACAAGAAATTAATAAAAATATAATTTGGCTGGTAAAAAAATAGAAAGTTGTTGATATATATAGGTTTTGAGGTATAATAGAAAATGAAAAATGGCTAATTTACTAG # Right flank : CATTAATATTCTAAGATAATATTTTAAGAAAAAGTGTAAAATGATAACGTTTTCAATAAAAGTGTGATAAAATATATGTATTACAGCTAATGATAAGGATAATTCTAAGTCAAAGGGTGGACGATATTTTATTATGTTTAACCATTAGTATGTTTTCTAATGGTTTTTTATTTAAGGAGGCAAGATGGATAGTAGGATTGCGATAATTGGTGTATTTGTTTATGAATTAGAAAGTGCAAATAAAATTAATAATCTTTTACATGAGTATAGTCAATATATTATTGGACGTATGGGAATTCCATATAAAGATAAGAAAGTTTCTGTTATTTCGGTTATTGTAGATGGTCCTAATGATGTTATCGGAGCTCTTACTGGTAAGATTGGAATGATTAAAGGAGTTAGTGTTAAAACACTATATTCAAAAGTATAAAATGAATAACATTGAATTGATTGATAAACTAAATCATGAAGGTGAATTAGATTTTGATGAATTTAAGCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 6141-5915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMLH01000102.1 [Clostridium] saccharogumia DSM 17460 BR82DRAFT_scaffold00100.100_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 6140 30 100.0 34 .............................. CTAAAAACATCACTTAATATATACGTTACAGGAA 6076 30 100.0 36 .............................. GTTGCATAGTGATATGCATCGTTAGTATTATCAGCA 6010 30 93.3 36 ...............A..........G... TAGGTATACTGTTCTCCAAAATTACGTGCTAGTTTG 5944 30 96.7 0 ...............A.............. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 97.5 36 GTTTAATAACAACATTAGATGTATTGAAAT # Left flank : GTA # Right flank : CTGATTTCAGTAATAACACCACAACAGAATTTGATTAATCAAATTCTGTTGATTAAAGAAAATGATATTTTGATAAAATCATTTTTTAGATCTTTGGACTTCTGGTAGGATTATTTATTGTAATTATGACTCTAAAAAACCCTTTTGATATTTTTTTGCAATTCTTGTAGTTACTTTTATAATTAGTAAAAAGATATTTGAAAAAGAATTAACCTAGAAACTTTATTTCATTAAAGTTTTATTTTTATTTGGACATTAAATTATTGCTTTAATAATCGTTGACAAATTTATGTAAGCGCTTTATCATTTAGCTATAGAGAAGTTTTACAATTATATCTTAATTAAGATATCAGCTTTCTATGATGTCTTTTTTAAATATAATTAAAACTCTATGTGGGGAAAGAATATTAAAGAAAGTGAGGATTTTTATGAAAAAGCTATTTTCTGTGTTGCTGGTAATGACAATGTTATTTTCCGTCATAACACCATTATCAGTTCAG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //