Array 1 9290-8734 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITC01000101.1 Clostridioides difficile strain FD182 sequence101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9289 29 100.0 37 ............................. AAAGTTTCTATGGATGGTTTAGGGGATTATGATAGAT 9223 29 100.0 36 ............................. TGCAAAAGGGCAGAGAGTAGTGACTCGATACTACAA 9158 29 100.0 37 ............................. TACATATACCATATATACCCCCCTGCAACGCTTCATC 9092 29 100.0 37 ............................. AATGTGATTAAAAAAGGACAAAAGTTGGTGATACCTA 9026 29 100.0 37 ............................. GCGAAAAAATGCTAATAGTAAAAAACTTACAAGTAAC 8960 29 100.0 36 ............................. TAACAGTATTAGGAATTATTACACCTATTTCAACAG 8895 29 100.0 38 ............................. GTTGTAAATTGAAATAGCTTTTCTTATATTTTTATTTA 8828 29 100.0 37 ............................. GCTTCTCACAAATAGTTTCAACTACTTTTTCATATTT 8762 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AGATATTTCATAAGTTAATATTTATTGTTTATATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATACCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTAAAGATATTTAAAAATAATATATTCATAATATTATAAAATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCCTAATAGTTGAAATATAAGGCATTGAGGGTATGTGATAAATGTTATCATTTGCACTACTCATGGTTCACTGCAAATTTGATAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGG # Right flank : ACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTCCATATCCTTTAGTAGATACTTTTGTTGTTTTTTAATCTTTAGTAATTTGTTCTTGAGTGAACCGATTATTTTTTCTAAATTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACATGTATAATACAATTAATTCAGTTTCAATTGTCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTAGATAAACCAAAAATTTTAGCAAATATTATTAACACACGTCCCTTATTGCTCTTTCACCAGACTCTATTCTATTCATAACACTTATATTTATATTTGTTTTTTTAAACAATTCTTTTTGAGACCTACTCATATTTTCCCTAATATATTTAATCCTTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 28289-28813 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITC01000004.1 Clostridioides difficile strain FD182 sequence004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 28289 29 75.9 203 T......TA....A..T.....C...T.. TCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGAACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG CC [28299] 28523 29 100.0 37 ............................. ATTCCTAGGGTCGTTTTTTTTTAAAAATTCTATCATT 28589 29 100.0 36 ............................. AATTTTATATTTAAATAATCTAAATTCTCAGTTATA 28654 29 100.0 36 ............................. CTGCACTATTGTTGTATATTCTTATAAAGTCTGTTC 28719 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 28785 29 72.4 0 ......C.........AAT....AG..TA | ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 6 29 91.4 70 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : GGTCGTTGTATTGACAATGCTCCTATGGAAGGATTTTGGGGAATTTTAAAGGTAGAGATGTACTATTTAAGGAAATTTGATACATATGAACAATTAGTCAAAGCAATAGATGATTATATATACTTATAATAATTTTAGATATCAAAAGAGATTAAATTCTATGTCTCCACTTGAATTTAGGAAATATTTAAGTACAGAGATAGCATAATTTATTTTAAGTAGCTCTAAAAAAATTTAAATATCTAGGGTTTTATTTTACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAGAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCAATCTACGTCTAAATAGATTGTAGTTCTTCTTG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAACATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGGGCAGTATCAATAAATATATTGTCTAAATTTTTTTTAGGAACTAGTTGACTAGCCATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTAGTCATATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 23389-24010 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITC01000059.1 Clostridioides difficile strain FD182 sequence059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 23389 29 100.0 37 ............................. TCAATTGTAAAAGATCCTATAGGGTATAAACTAACTT 23455 29 100.0 37 ............................. TTGTCATAGTAGCGACTTATTACAAAGTATTTTTCTA 23521 29 100.0 38 ............................. CTCTTACGCTTTTCAATCACTTTTTCCTTGCTAAAATT 23588 29 100.0 38 ............................. TTGAAATTTCAAAGATTAATCGGACGCATGCAAGGAAT 23655 29 100.0 36 ............................. TTGGAAATAAGTATAAAGACAGTGATATGGAAATGG 23720 29 100.0 37 ............................. TATCCATTTCATATTTAGATAAAATCTCTTTAAATGC 23786 29 100.0 37 ............................. ATGTTATTACATAAAAATTCTTCATCTATAACTTTAA 23852 29 100.0 36 ............................. AAAATAAGGGTTTAATTTCCCTGGTGTCGAGGAATA 23917 29 100.0 36 ............................. TTTAAATGAAACTCTTGAAATAGTTGACGTAGTAGC 23982 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGTGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAAATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTCTTGTTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TATATATTAGATGTCAATGTCAAGGATACAAAATTTGTTTTATATTAACTATATGGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 29603-29247 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITC01000006.1 Clostridioides difficile strain FD182 sequence006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 29602 29 93.1 37 .AG.......................... TTTGTATTTGTATCTACACTACCTTGAACCTCAACTT 29536 29 100.0 36 ............................. AAAGTATCTCTAAATCCTATTGCTTTTTCGGTTAGA 29471 29 96.6 36 ...............A............. CAAAATGATGCTTGTTATCAAAATAGGTTGTATTAT 29406 29 93.1 36 A...........................T TTCGGATACAGAATTGAAAACAAACATCTAGTAATT 29341 29 96.6 38 ............................T GTTGGTTCAATTTCCAAATGACTTAGACAGTGATTATG 29274 28 86.2 0 ....................AC.-....A | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 94.3 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CAGTTGGCTGTTTGTGAGATTATTAAAAAGATTGATTTAGAAGAAAATGAAGTAAAAGGAGTTTGGGAGACTAATGGAAGTTGGACTGGTACTGTAAATAAATATACAAAGAGTGTAATAGATAAAATAAGAAATTGGATAGAGGAAAATAATAGACCTACCAAGATACAAGGTGAGAAGAAGAATTATCATGTGGTTTATAAAATTGAGTAAATTTATCAGTTGTATTAAATAATTTAGTTTAGTTTTTAGGGGGATTAATACAATGTATGAGAATTTACTTGATAGTATAGATATTGAAAAGAGAAAAGAAGAATTTAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTATGAGAAAAAATTAGAGAAAAATAAGTAAATAATATGGATAAAGCACTTGGATATTTCACTGTTTCAAGTGCTTTGTATGTTAAAAAATGGTATAATATAGGGAA # Right flank : TTAAAAATACTGAAAAACACTTACTCAGGTAGGTGTTTTTTTATTGAAAGGAGGTGATTATAATGTAAAAATTTTACTTATATAGTATAATATTCTTATAAAATTATGTAGGGGGTAATAATATTATGGGGTTATTTGGAGGTAAAGAACCATGTTGCATATGTGGAGGAAAGGGTAAAAATAAAGTTTTAGAAAATGAATATCTGTGCAATAATTGCTTTGTTGATTTTACAATATTCTCTAGTGAAAGATTAAAAACAACTAGTGCAATGCAAGTATTAGCAGACCATGAGGGAATAAGAAAGTTTATAAATTTTTCTAAGAAAAATAGAGAACTATTAGCAAAATTTGTTGAGACAAATAGAATTAATAAATTTATATCCATTGATAAAGATAATAACTTTATTAAAATATCAGATATTCGCAAAGGTGGAGATGTAATAGAAAGTGTATATGCAACTGATGAAATTATGCAATTTGAACTTTTGGAAGATGGAGAG # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 31813-31190 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITC01000006.1 Clostridioides difficile strain FD182 sequence006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 31812 29 100.0 37 ............................. CTGAGTCGGAAGCATATAATAAGTAATATCAAGAATA 31746 29 100.0 37 ............................. AATGCAGAAAAATTTGAAAGTTGGGTATTTGATGAAG 31680 29 100.0 37 ............................. ACTCCAAAATTGAAGTTTATAAAATTGTAAGTATAAG 31614 29 100.0 37 ............................. ATGTTCAATTTTGCATTTGCACTTGTAGACCCTGTTG 31548 29 100.0 37 ............................. TTGGTTATAGCTCTGCTTGCATGAATTTCATTGCAAA 31482 29 100.0 37 ............................. TATTTTGTATGGGAAGTACCACGTGCAGAAGCTACAA 31416 29 100.0 37 ............................. ACTAAAGGAGTTTCTTTGTTCTTTATGCTCTACAACT 31350 29 100.0 37 ............................. AGATTTTATTATAGAGTAGAGGAAGGGCTTGTAAATG 31284 29 93.1 37 ...............T....T........ GAGATTTGTATGGAGGCTATAAAACAAAACGGATTAG 31218 29 79.3 0 ......T........T.....T.CA...C | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.2 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : TATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAATAATTGTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTACGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGTATGATAAGTGTTATCATTTGCACTATTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGATTGGGTAAAATAATTAGAAAAAATTGGGATAAGTTATTGACTTTTGAGTTCCAAAACTATATAATTTAATTATGGAACTCAAAAGTGAGGTGATAACATGAGTCCTAAAAAAATAGGAAGACCTGTTGTAGGAAGCCCTAAAACTAATGATATTAAGGTTAGAGTAGATGATGAAACTAATGAAAAATTAGATGAATACTGTAAAAAAAATAACCTTACAAAAGCAGAGGCTATAAGACAGGGAATCCATTTACTTTTAGAGAAATAACAAAATAGAGCATTCTCCCCGACCAAAGATTGAATGCTCTATTTCCAACAAAGAAGTTAGCACTTCTATATGAAATATTTTATCATATAGAGAAACTTCTTTCAAATCAATTTGAGGAGGAATTTATATGAAAACTAATTTAGAATTAATCAAATCAGAAAACTTTGGAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 32777-32415 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITC01000006.1 Clostridioides difficile strain FD182 sequence006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 32776 29 100.0 38 ............................. GTACCTGCATGGTGAGTGAGGTTACCAAGCCCCACCCG 32709 29 100.0 37 ............................. CTAGGTCTTAAACTTGCATTTACTAAAGACATATCAT 32643 29 100.0 37 ............................. TATTTACTATTTTCACAGTTTAAAGAAGTATAGTAAC 32577 29 100.0 38 ............................. ATCGCCTTCCAGATTACTTTTGTATATGAGGTCAGCAA 32510 29 100.0 38 ............................. TCAGTTTTTCGTTTGATTGGCTCTATCTTTAAAAAAGA 32443 29 89.7 0 .....................C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.3 38 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATATTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTTACAAAATATGGCTTAACACTTGAAATCTAAGATGTTGAGGGTGTGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAAAATACTGAAAAACACTTACTTTTATGGTAGGTGCTTTTTTATATTAAAATCTGTGTACTTAATTGAAATATTTGGTAAAATATGTAAGAATTGTATGATATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAATAATTGTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTACGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 492-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITC01000071.1 Clostridioides difficile strain FD182 sequence071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 491 29 100.0 38 ............................. AAGCTAGAAACTAATATCACGGGCATGGTTGATAACTT 424 29 100.0 37 ............................. AAAAATAAAACCGAAAAATCGTTGACAATATCCGTTT 358 29 100.0 37 ............................. CTTTATAAAGTAAAAGCATATGTAGGTGATAACAATA 292 29 100.0 37 ............................. GTAATGTTAAATGGTATGTTAGCAGGATTTGAACAAT 226 29 100.0 37 ............................. TAACTTTTCTGTTTTATCTTGCCAGTCATTTCTTCTA 160 29 100.0 37 ............................. CCTAATATAACTATTAAAGTAGTATTCTAGTAGTTTT 94 29 100.0 37 ............................. CTTTCTGCAAGCTTATTAGCTCCACCATTATACATTG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATACGATACTTACTGACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAGAAGCTTCTTTATCCATATCATATAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCGAGAAGAAGAACTATTAGAATAGATAATATAGTAAGTATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //