Array 1 47756-46865 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRZJ01000014.1 Staphylococcus simulans strain 116 contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 47755 36 100.0 30 .................................... TTGAAGATGAAGATTATTACAAGGTAGCTG 47689 36 100.0 31 .................................... AACCGAGGAACTGGAACAGCTTATTGATCAT 47622 36 100.0 30 .................................... TTATTAAATCGGTAGTGGATTGTAACGCAT 47556 36 100.0 29 .................................... ATATACAAGCCGATTAATCAGAGAAGAAA 47491 36 100.0 30 .................................... ACTGATGAGATGAAGCGTGAAGAACAATTA 47425 36 100.0 30 .................................... CAAATACTTTAATAATTTCTTGATGTTTTA 47359 36 100.0 29 .................................... AGAGTTATGTGAGTTATTACCGAATAGAA 47294 36 100.0 30 .................................... TTAGGTTTGAACTTAATATACAAAGCATTT 47228 36 100.0 30 .................................... ACGGCGGCGAAATTATGAATTTAAGCGGTG 47162 36 100.0 30 .................................... TTATTTTGTGTGGAAATTCAGCGGAATACA 47096 36 100.0 29 .................................... AATATCATTCTTTTTAGTCATTGGACAAT 47031 36 100.0 30 .................................... GAAAATCGAACGTACTGTGCTTGATAAAAT 46965 36 100.0 29 .................................... ACAAGCAATGATAGAAAATAGTAATCCAT 46900 35 88.9 0 .................C.........C...-...A | G [46874] ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.2 30 GTTTTAGTACACTGCAATTTTAGGTATGAGTGATTC # Left flank : AGACCCG # Right flank : TATTGTTTGTTGGCAGCTTCGACTGTTTTTTTAATGTCTTATCAAGTTTGTATAGATACTGTAAAACAGGTTTATTCTGCAGGTTGTATCGGTTACTTTAGAAGTGTGTCATTATCATTATTTTAAGGGTAGGAGGCTTATCATGAAAAGATTGAGTATGATCGGTACGGCATTAGTAGCAAGTGCATTAATCTTCAGCGGTATTGAAGATGTGGCAGATGGTGCAGAAGCTTATGCGGCAAAGGCGGTGACAGGTGAAGAGTTGCCGGATTCAACTGATCCAGATGGCGATGGATGGGCAAATATCGGTTTTGAAAATCTGCAGTTAGATGAACCTTATCAATCTCAATTACTCGAGTTAACTAAAATGAAAGATTCTGGCCAACTTGAACAAGCGGAATATAATGAAAAAGTCGCTGAGCTTGTTTCGAAAGCGAGAGAAGTAAGCGGTAATGAAGCGAATGCTCAAGCATCAGCGCAACAGCTGCCGGATTCTGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACACTGCAATTTTAGGTATGAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 38630-39130 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRZJ01000015.1 Staphylococcus simulans strain 116 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38630 36 100.0 30 .................................... ATGTTTTACAAGAAGAATTAGCACCTGATC 38696 36 100.0 30 .................................... TGATACACATAAAACTGTTCAATAATATCT 38762 36 100.0 31 .................................... TAAATGATGATACCAATCTGTTAAGTGTGCA 38829 36 100.0 31 .................................... TTGTAATTCCGTATTTAATTATAAGCGGCTA 38896 36 100.0 31 .................................... AGCGGTAAAGTTATCGGTGGCAACTGGACGT 38963 36 100.0 30 .................................... ATATTTTAATCCGAATGAAGCCTATGACAG 39029 36 100.0 30 .................................... AAAGACGTCTCTAAGTCTTCTTTTGAAACA 39095 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 31 GTTTTAGTACACTGCAATTTTAGGTATGAGTGATTC # Left flank : ATTATCAGGCAAAGAATAAAGCTTTTCTAGTCTATCTATATCCAGAGTCGGGGTTGAGTATAAAGGAACAATTGAGATTTAGAAAACTACTAGATGAATTGCCTTTACCGGTCATAGTTTTAACTGAGTCTCAATATTTTTTATCAGACCATCTCAATGGATTGAATTACTTCATTTCAAACATTCAAATGATAACTGCAGATTTTTTTGATGACCTTTACTGGAATGCGCCAATCAATGTAGAGAAAGTTATACTAAAAGAAAGGTTCATGAATCTATTTGTTAATTATTGCTCATTTTTAGAAGTAAATCCGACAATATCTAATCATAACCTTTCAGAGATCATCGTTTTTGATGATATAGATTTATATGTAATAGTAGCTTTCTTAAAACATTGTAAACTAGAATACCAGCTTGATATTGATAAATCAGCTATTTCAAAAGCATTGGTATCTTATCTATTTGCATAAAGAGTATTTAAGTTTATGATTAAGCTAGAG # Right flank : AACTACATCGTTACTAAAGTAACGAGTTTCTGTTTTAGTACACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACACTGCAATTTTAGGTATGAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //