Array 1 15460-13906 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIV01000062.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2045 NODE_62_length_25641_cov_3.11679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15459 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 15398 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 15337 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 15276 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 15215 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 15154 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 15093 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15032 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 14971 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 14910 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 14849 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 14788 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 14727 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 14666 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 14605 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 14544 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 14483 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 14421 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 14360 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 14299 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 14238 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 14177 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 14116 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 14055 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 13994 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 13933 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2282-3758 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIV01000012.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2045 NODE_12_length_83725_cov_3.44946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2282 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2343 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 2405 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 2466 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 2527 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2588 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 2649 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 2710 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2771 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2832 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2893 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2954 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3015 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3077 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3180 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3241 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3302 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3363 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3424 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3485 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3546 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3607 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3668 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3729 29 96.6 0 A............................ | A [3755] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //