Array 1 1003049-1004419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017970.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1900 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1003049 29 100.0 32 ............................. GAATGCCGGAGATTACCGGCTCCCCCCTGTCG 1003110 29 100.0 33 ............................. ATTCGAGCCGATTTTGTCACGGGCCATGCCTGC 1003172 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 1003233 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 1003294 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 1003355 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 1003416 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 1003477 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 1003538 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 1003599 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 1003660 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 1003721 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 1003782 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 1003843 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 1003904 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 1003965 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 1004026 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 1004087 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 1004148 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 1004209 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 1004270 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 1004331 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1004392 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1021182-1023407 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017970.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1900 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1021182 29 100.0 32 ............................. GCAGCATTATATCCTGTCAATACTGGGTTATT 1021243 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 1021304 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 1021365 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 1021426 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 1021487 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 1021548 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 1021609 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 1021670 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 1021731 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 1021792 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 1021853 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 1021914 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 1021975 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 1022036 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 1022097 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 1022158 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 1022219 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 1022280 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 1022341 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 1022402 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 1022463 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 1022524 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 1022585 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 1022646 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 1022707 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 1022768 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 1022829 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 1022890 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 1022951 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 1023012 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 1023073 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 1023134 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 1023195 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 1023256 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 1023317 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 1023378 29 96.6 0 ............T................ | A [1023405] ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //