Array 1 1260-133 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESD01000192.1 Escherichia coli strain KCJK8909 NODE_193_length_1324_cov_7.767753, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1259 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1198 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1137 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1076 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1015 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 954 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 893 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 832 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 771 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 710 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 649 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 588 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 527 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 466 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 405 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 344 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 283 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 222 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 161 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8772-9350 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESD01000014.1 Escherichia coli strain KCJK8909 NODE_14_length_72471_cov_8.171680, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8772 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8833 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8894 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 8955 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 9016 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 9077 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 9139 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9200 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9261 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 9322 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //