Array 1 430-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAU01000001.1 Nocardia amikacinitolerans NBRC 108937, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 429 37 100.0 34 ..................................... TTCGGCCGGTCGAAGCGCACCGGGCGTGACGACT 358 37 100.0 36 ..................................... CTGTGCGGTCAGCATCGCGGCGGCGGAAGGCGGGCG 285 37 100.0 34 ..................................... CCCTTCGGGCGCCCGCGGCGCGGCTTCGGCAGCT 214 37 100.0 34 ..................................... GGACTGGCTGGCCGACCCCGCCCTACCCGGCGTC 143 37 100.0 33 ..................................... TACGACACCGCCGTCTACCGCCTCGAGCGCGGC 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 34 GCAGCGCCGAGCCTCCGGGCTCGGCGAGAATCTCAAC # Left flank : GCTCGGCTACTCGTACGTCACCTGCGTGGCGACACCGACAGCTACATTCCCTGGACGGTGTCCTGATGGAACTGCTGATCACCTACGACGTCGAAACCACCACCCCCGAAGGCGCCGCTCGACTGCGTAAGGTCGCCCGAATATGCGAGGGCTACGGCCACCGAGTACAGAAATCAGTCTTCGAAGTCACATGCACACCCGCCACACGGCTTCGGCTCGAAGCCGCGCTCGACGCCGCCATCGACCACAGCCGAGATAGCATCCGCATCTATCAACTCGATCAAGGCACTTTCGCCAACACCCGCCACCGCGGCGCGTCCGTGAAACCTCCACACGACGAACCACTGGTCCTATAAGCAGTGCTGCATCGCTTCGGAACCCTAGGCGCGACCGAAATCCCTGGAGGGTTCCGCAGGGCCGACAAGGGCGAACAGTTTCCCGACAACGCCGCTTCACACACCAAAACCGGAGCGTGTGAAGAACTGTGCAGGTCATCCAGG # Right flank : CCGGAGACTCCGGCCGGGGGTTCCGGACTCCGGTTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGCCTCCGGGCTCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 10429-8940 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAU01000001.1 Nocardia amikacinitolerans NBRC 108937, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 10428 37 100.0 36 ..................................... CAGTTCGAACAGCACTGGCGGCCACAACGCCCGCTC 10355 37 100.0 34 ..................................... TGCACGTCGCGGTCCAAGTAGAGGGCGCGCATGC 10284 37 100.0 34 ..................................... GAACCGGTCGCCGTCGTCGGGCCACCGGCAGGCG 10213 37 100.0 36 ..................................... CGGAACTTTCTTCCGTGATGCCTATGCAGGTACATA 10140 37 100.0 32 ..................................... GGGGACTGGCCGGGCAGCATCGCCAGGCGGAC 10071 37 97.3 36 ..........C.......................... ACCGCCAGCGACGGCCGATGCGGGCGGCCGTCGCCT 9998 37 100.0 35 ..................................... GGCGCGGCCTGTTTGGTCGCGGTCTGCTCCCGCCA 9926 37 100.0 36 ..................................... CTGGCGGTCGCTCGCGGGCTGCGTGGCATCGCCGAC 9853 37 100.0 36 ..................................... GGCAACACGTCGACGACCGCGTGCGTCGGCGATGAC 9780 37 100.0 35 ..................................... GCGCTGCGCCGCGATGTCGACCTGTCCGGCTACTC 9708 37 100.0 36 ..................................... TCGGGCGGGCGCCGTTGATGATCAGCATGAAGACTT 9635 37 100.0 37 ..................................... ACGTGCCGTATCCCGTTGCCCTCGGCGGGCGGCCCCG 9561 37 97.3 35 .........A........................... GCCGCGCTGGGCTGCATGTTGGAGCAGCTGGCCGA 9489 37 100.0 35 ..................................... TTGGCCGTGCCGAAGATGCCCGCGCGCTGCTTCTC 9417 37 100.0 38 ..................................... ACCCACCCCGAGTGGGTAGGCGGTGCTCCGGGGCGAGG 9342 37 100.0 39 ..................................... GTCCCCGGATGTGCCGGAGCTTTTGGTCGAAGCGGACTA 9266 37 100.0 34 ..................................... CGTCCACACGATGCGCCTGCCGTACTGGGCGCGC 9195 37 100.0 36 ..................................... CTATGAACAACAACGACATTCGACCCGCGCTGATTG 9122 37 100.0 37 ..................................... ATGTCGGCGGCAGTCGTAGGCGCCGCCGCGGCGACGG 9048 37 97.3 35 ......................C.............. ATCTTCCGACTGTGCTCTCGCTCTGGGGTCGACCG 8976 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 99.6 36 GCAGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Left flank : TCGGCGAACTGAGCGACATACGCAGCGACCTCGGCCTGCAACGCCGCCGCGAGCATCGCCCGCGCACCCTCGCGCACGATCTCGTCGATCGGCGAACGCGACGCGCCGTCGGCCACACCGACATTGTTGGAACCGGCGCCACCGTCGATTACCTTGAGCATTCGGGACGTACCTTCCCGCCCGGCGTTGGCGCGCCAGGCTTGATCAGATCCAGGATTCGAAGATCATCCGGGAAGGTACTCCTTCCCGGTCATCCACAGGTTCTGATCATTGCTTGGGTGTGAAGGTAGTCAGCGGGGTCGCCTCGAAACCCTTGGAGTGCACGGGCTGTTCGGTTGGTGATGTGATGGTCGCCCTGGTTGGGGTGTGAGTTCGGAACGTGGGGTGCGACGAAAGTCCCAGGAGGGTTCCGAAGTGGCGACATGGGAGGATCGCGTCAATGAGTTGTCGTTCACGCGTCGGTGTAATACCTGGCAGGGCAAAACTGCAGCTCATCCAGG # Right flank : GACTTGATGAGTGTGCATGTCTCAGCTGGCTCCGGCCATCGCTGGACCTTCGGGTTCGGCGTGGCTATTGGAGGCGCTTCGGGGATTGGGTCGGGTTAGTTTGTTTGGGTGACTTTGTGGGCGCATAGCCGTAGTGAAGTGTCGGGTGTTCGTCATGGTTTGGATGAGCATTCTCGGTCGACGGCGTTGTGGGCGGGGCGGTTTGCGGCGGTGTTCGGGGCGGGGGAGTTGGCGTATGTGTTGGGGTTGTTTCACGATGCGGGCAAGGCGGGGTGTGTTTGGCAGCGTCGGTTGATCGAGGTGGAGGCCACCGTGGGGCGGGTGGGGGTGCCGCACAAGGAGGTTGGAGCGCGGGCGCTGCGTGGGGTCGCGGGTTTGGCTGCGTTGGCGGTGCTGGGTCACCACGGTGGAATGGTGAGTCCGGCGGTGTTGGAGCAGGTGTGGTTGGACCCCGACGGTGTGAATGACGGTGAAGTGCTCGCCAGGTTTTTCCAGCAGGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 37-437 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAU01000094.1 Nocardia amikacinitolerans NBRC 108937, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 37 37 100.0 35 ..................................... GAGGGAGGGCCACTGCGATGAGCGACGTACGAGAG 109 37 100.0 38 ..................................... TGGACGATCCGCCAACGCCCTTTGGTGAGCAGGCACCG 184 37 97.3 36 .A................................... AATCGCAAGATCACTGGCGCGGCGGGGGTTTTGGAG 257 37 100.0 35 ..................................... CTCGGCGTACTCGACGACCTGCTGCCAGTTCTCGA 329 37 86.5 36 ..............T......G.....C......G.T GTGATGGCGGTGTCGCGGATCAGACCACGGGATTTG 402 35 81.1 0 .......T...-....-......C.TC........G. | T [424] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 94.1 36 GCAGCGCCGAGCCTCCGGGCTCGGCGAGAATCTCAAC # Left flank : GCCGGACGCAATTCGCTGGAAACGCACCGTGGGTGCG # Right flank : CTCGAGAAGCGGAAGGTCGCGGAACGCGTGCGTCCTATCCACGGCGCACTCCACACTTCGAACGCGCACCTGTTCAGCTGGATACGGGTTGCATCGTGATACCCGTGCTTCCTGACGGTGCGATCGGCGCCGGTTGGTCGATGCCGGATAGGGGGTGGCTCTCGCCGGTCAGTGTCATGAGTGCCTCTATGACCTCCGGTAGTCCGGCCTTGACGTAGATGAGGGTGGATCGGGATCCGGGGCCGTTGCCGGGTCCGGTATGGCCGGCGTAGGCCCGCGCGACTGCGATACCGAACTCGCGTTCCACGAAGGTCAGGGTGGTGTGGCGGAACCAGTGCGCGGTGACTTGGAGGGCGGCGGCCCAGGGAAGGTGGGCGCGAAGACGCTGGTTGAGGGTGTCGTAGCGACGGCGGCCAATGGCGCGGCCGTTGCGGTAGCGGAACACTCGATCGGTTCGGGTTATGCCGCCTCGATCGTGAATGTGTTGGACGAGGTGCCGC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGCCTCCGGGCTCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //