Array 1 15567-15802 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACNN01000023.1 Porphyromonas endodontalis ATCC 35406 contig00089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 15567 33 100.0 33 ................................. TTTTACACCTATTTCTTACGACAGTTTTACTGA 15633 33 97.0 35 G................................ GTCTCAGATACTTGTTTTTCTGAAAAACTTTGATT 15701 33 100.0 36 ................................. CATTTTGAATAATGTGATGAACGCAGAGAATGCTCG 15770 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 99.2 35 AGTCGCACCCTTTAGGGGTGCGTGAATTGAAAC # Left flank : AGATTATCCCGTATTCCTCATCCAATAGCATTGCTCTATATGTATGTACTAGTAACCTATGATGTACAAACATCTGATCCACAAGGAGCTAAACGCCTTAGAAAAGTTGCCCGTATTTGTAAGAATTATGGACAACGAGTGCAAAACTCAGTTTTTGAATGCCTTGTAACCCCAGCTCAAATGGTCTCATTAGAGCAAGAACTCTCCTCTAATATAGATCATACCTCCGACAGTTTGCGCATCTATCAACTCGGATCGAACTATAAACATAACATTAAAATGATTGGCAAGGAAACCTCTTTCGACTTTGAAGGAGAGTTGTTAATATAGCAACTGCGAACCTCATGCTATCAGTAAAATCCTCTACTATTCGCAACTCTTGATTCTCAGGATTATAACATATTACCGAGCATTATTCGGGTACACTCCTTTTTGTAGTACATTTGTTCTCGCAAAAATGGAGCTATAGTACCTCTATTTATCAAGTCTATAGCCTCCGC # Right flank : CTGGACAGGCTCCTAGCCTTCGTTACATCGTAAA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGCACCCTTTAGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 194-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACNN01000020.1 Porphyromonas endodontalis ATCC 35406 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 193 30 100.0 35 .............................. CGATTTCAAACTCCGCTAGTCTTGACTTTGACAAA 128 30 100.0 36 .............................. AGGTTAAACGCAGAAAACCTAGCATTATCTTCATCG 62 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 CTCCAAATTGTACCTTAGTGGAATTGAAAT # Left flank : TATTGGGAAAAGAAAAAGCTGCGATAGATAATTTCCTCTAGCCATGGAGATCCGAGAAAGTTTTATTCTTTCTAGCATTACGAGGGGCCTTTCTCTGTTGTATGGGCGCCTATAGTACAGGTTCTTGATACTAGGTAGCACAAGATTGCTAGGGTCAAGGCTTCTACTAAACGATAGATTGCTACTGAAGAGAGTACTTTTCTATTTCAGTATTTATTGGTAATATTGCTGGAGCTAGATAAGTACCAGTTCGCACAAAGAGGGTGGGAGATAGCGGTTTCAGAGCTCTTTTTGTGTCGAAGAAGGAGCTTTTTCTGAGGATAGCCATACCTCAAATAGATTGCACCGTTGAAGTGTTTGGTTAGCAGATAATTAGTGCTCTTGTCGATCCTCGGCCCTTTTCTTAGGATTGCACATCGACGATATTTTCTCCTCATTATCTCATCGGAAACGTTTCTCAAAGCCCTTGTTTATGTGATATTTTCTGTCTAACTTCACGG # Right flank : TAATCAAACTTATAAGCTTGCTTAATGTTAAGC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCAAATTGTACCTTAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 32-195 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACNN01000014.1 Porphyromonas endodontalis ATCC 35406 contig00084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 32 30 100.0 38 .............................. TTCGTAGTCGACTTGTCCGGGGATGATGATCTTCTTCT 100 30 100.0 35 .............................. TGATCAAAAAAGATTTACTTCGTTGCTCTCTTCTA 165 30 86.7 0 ..............C....AT.G....... | T [190] ========== ====== ====== ====== ============================== ====================================== ================== 3 30 95.6 36 CTCCAAATTGTACCTTAGTGGAATTGAAAT # Left flank : CTTATCGAAGACGAGGCTGGTCGCACAATAGC # Right flank : TATGGGGGGGAGTCAAATGGGCGTTCTCTCTTGATGTCACGCTAACAAATTGCTCTCAGAGGGAGGGGGAATTGGATTGTCCTGTGGATGACATAACCATTCATGGGGCAATTTTTTGTTGAGTCGAGGGGAGAGGGCAAGAGTGGTTGAGTTGAAGATATATAATAGACAGTTCTTTTTATTGCGGCATTTCGAATAAAAATCTTACATTTGTGCCGAATAGGGTTAATGACATGGAGATATAAATTATTCCATTTCTTGAAGACCTTGATTATAATGAAGAGTATAAATGAATCAAAATGCCAGAGATGAAAAGGAATTTGTTGCTTATTGTGGGAGTCTTCTCCTTCGTTTCTCTCCTTCTTGCGGGATGTGACAATGGGACTAAACCTCCCTCTCCTCAGAAGATTTCGGAGATAAAATTTGAGAAAGAAACTGTCAATCTTTCCGTTGGCGAGAGTCTACTTCTTAGGCTCATTGCTACGCCTAAAGAGGCTACT # Questionable array : NO Score: 8.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCAAATTGTACCTTAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 38-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACNN01000011.1 Porphyromonas endodontalis ATCC 35406 contig00099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38 32 100.0 36 ................................ CTGCAATCATTTCATTTATCATATCAAAACTCTGTC 106 32 100.0 36 ................................ CATTGATTACTCTAGAGTGTATACACATGTTGTTTT 174 32 100.0 35 ................................ GCAATCTTATTGAGTATCAAAATTCTGAGAAATCT 241 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 36 GTCGCACCCTTTAGGGGTGCGTGAATTGAAAC # Left flank : CCACAAAGCGACCTGTCTATTGTAAGCAGTAGTAGCAG # Right flank : CTGTCTTTTAGCCCTTGCAATGTATGCAATTAAATGTCGCACCCTTTTTCCATAAGTACAGAAAAAGGGAACCCCTCTCAAGGGAGCTCGTCGCAGAGCGAGGCATCTTGAGAGGGGCGATTTGTATTCTTATAGGATTGGCGGGATCTTAGGGAGTATTCCCATCCACATCCTCCTGAGGTAACACGCTATCAGTGGGCTGAGGAGTCGGCTGGGCTGCTCCGTCTTGGTCAAAACCACGAGCGGACTCTTCTCCATATATCATTTGGATAAAGCCCATCAGCGTATTAGCTTCGTGGTCTACCACTTTGGAGCCATGGCTTCGTGCCACTTGCAAAGCAAGGCGAGCCACAGAGAAAGTCTCGTCTACTACCCCGTCTCGATAGTGGCGGAAGAACATCTTTTGCAATCGTGAGCCTCCCATCGCAAGGTTCATAAGCCAACGGCTCTTGCGCATATATTTGGCCATTACATCCGAAACGATCTCATCCCCTCGCTGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTAGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA //