Array 1 96566-93978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSZT010000003.1 Klebsiella pneumoniae strain SCC5 SCC5_c3_length_317185_cov_95.546700, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96565 29 100.0 32 ............................. CTGCTGACGACGTGGATCCGCTGGAACGTCAC 96504 29 100.0 32 ............................. TACTGGCAACGGAATTCGGTTCGACGTTTATG 96443 29 100.0 32 ............................. CGCTCCCCAGGACAAACGCGGTCTCCGGATCC 96382 29 100.0 32 ............................. TTGCACGCACGTGAATAGTCCAGGCCGCCTGG 96321 29 100.0 32 ............................. TCCAGCGTGTGCATCTCGCCGATCTCTTTTTG 96260 29 100.0 32 ............................. TAGGGTATCCCGTTCTCATCCACGGCAATATG 96199 29 96.6 32 ............................T TGAACTGATCAAGGGGCGGCTTCAGGCAATTG 96138 29 100.0 32 ............................. AGTAACGAAACGGTCGCACTCAACCGCGCCGC 96077 29 100.0 32 ............................. TCTTGTTAGTGATTGAGTAGCCCATCTGGGAC 96016 29 100.0 32 ............................. CTACCCGTAAAAAAACCGCTGCCGCTGTCGCC 95955 29 100.0 32 ............................. CTCTTAATGGAATTCGTGAAGACGCTGGCCTT 95894 29 100.0 32 ............................. ATCTGGCGAGATTTTACGGGAAATAATATCCC 95833 29 100.0 32 ............................. GTTTTGACCGAGTATATCTGGCGGGATACCCC 95772 29 100.0 32 ............................. GTCCTGGCTGACCCGGACGAATTTGTTGTGAT 95711 29 100.0 32 ............................. GCGGTTTGCTATCAGATGAGCCTGTCATCAAA 95650 29 96.6 32 ............................T GCTGCACGATGTGATTGAGAGATGCCGGGAAG 95589 29 100.0 32 ............................. GGTTTATAGAGGCTGAGGTATTCACAATGCGC 95528 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 95467 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 95406 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 95345 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 95284 29 100.0 32 ............................. AGCTGCGTGACGTTGAAAAAGATGGCTGCGGG 95223 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 95162 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 95101 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 95040 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 94979 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 94918 29 100.0 32 ............................. TCTTCGAGTTCAGGCCGGTATCCCACTCGCTC 94857 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 94796 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94735 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94674 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 94613 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 94552 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 94491 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 94430 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 94369 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 94308 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 94247 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 94186 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94125 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94064 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 94006 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCTTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCAACACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7397-6398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSZT010000053.1 Klebsiella pneumoniae strain SCC5 SCC5_c53_length_9293_cov_65.413303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7396 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 7335 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 7274 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 7213 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 7152 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7091 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 7030 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6969 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [6916] 6915 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6854 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6793 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6788] 6731 29 86.2 32 ...........CC..A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT TC [6715] 6668 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6607 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6547 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6486 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6425 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //