Array 1 177269-176969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDN010000001.1 Campylobacter coli strain YZU0719 NODE_1_length_352862_cov_115.309273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 177268 36 100.0 30 .................................... CCGTGATCTAAAATATTTTTTGGATAATGC 177202 36 100.0 30 .................................... CGTTGCTCTAACTTTTCGAGTTGTCGTTTT 177136 36 100.0 30 .................................... TAACCTTAGATATGGCAAAAGAGCTTTGCA 177070 36 100.0 30 .................................... ATCCAAATGAAATGCAAATTTTTCATTAAA 177004 36 91.7 0 ..........A...........C............A | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 ATTTTACCATGTAAACAATTAATAATAGGCTAAAAC # Left flank : GTAAGAACTGATTTATTTGCAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGTATGTCATTGTATAAAAATACTCCAATTGGCGTAAAAATAAAGGGTATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTCATTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGCTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTGAGATAAGTCT # Right flank : TAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCGCAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATTGTTGTAATTTTGGCAATTTTAGAATCACTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTCCCCTCCAATTGTCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGGATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACCA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATGTAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 209532-209163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDN010000001.1 Campylobacter coli strain YZU0719 NODE_1_length_352862_cov_115.309273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================================== ================== 209531 37 100.0 29 ..................................... TAATAATATTGTGATATTAAAAATTATTC 209465 37 100.0 29 ..................................... CATTCTCTAGCTTCCATTATAAAATTACT 209399 37 94.6 29 ......T....C......................... TTTTGCTTGGTTTTATTCAAAAAAATGCC 209333 37 94.6 99 ......T.............................T TCAAACATATTGCATAATATTTTATATTTATTTTTTCATGCAAATATTTAATAAAGTATTATTTAAAAATATAATATTTTTTTAAGTAAAAGAATATTA 209197 35 81.1 0 CAA..-T....-.......................T. | ========== ====== ====== ====== ===================================== =================================================================================================== ================== 5 37 94.1 47 ATTTTACCATATAAACAATTAATAATAGGCTAAAACA # Left flank : ATATTCAAAAAAATGAAATATTAATTCCAAAAAGAGTATTATTTGATGAAAAAACATTAAAAATGATAGAAATGATGATTCCTACTTACAAAGATGAAATTTCTAATACAAATAAAGAAAATGAGAAAATTAATCAAATGATTAAGCTTGCTATAGAAAAAATGTTTAAAAATGATTTTTTGAATAAAATAAATAATTTTTAATTAGGTTTTTTTATGAATAATGTTTTGTTGCACAGAATAACTGAGAAAGGAAACATTCGCTATTATAGCATAGAAATTATTGCCACTCTATTTGAGGAATATATGGTTGAGAGAGTTTACGGAAATGTGCGTTTTAAAAGTTGCACAGGAAGAAAAAATAATGTATTTTCAAGTTTTAATGAGGCACAAATTTTTTTTGAGAGGTTAAAGAAACAAAAAATGAAAAAAGGGTATGCGTAAGTTTTTGCTTAAAAAACAAGAAAAAACATTGATAAAATAGGCTTTTGAGATAAGTCT # Right flank : AAGGTTTAGCACTTCACCTGAGCGTTTATTCGTTAAAAAGTGCGTTTTCTACAATTTAATTTTATTACAATCCTTTCTAAAGACTAACTTTATCAGGGCTTGAAACTCTCTTATAAGATTTTCATCTAGTCTTTTTGGAAAATCAGGCAAAATCAGTTCATCTCCTACCTTTTCCATCTCTTGCGCTAGTCCTGCAATCTCTAAAGTGTTTAAATTTGCTACATAGCCTTTATATTTGATTAAATTCATATCATGGCTAAATTCAAATTTATTACCATCTATTGTATGTTCTATCAAGTTTATAAAATAATCATCAATGATGATATTTTTTAAATCTATTATATTTGCTAAAATTTTTTTAGAACTTGCTTTAGAAACATTATCCAAAATGCACTCGTATTGAGTTTCTATCAATTTTCCTAACTCATCATAATTAAAAATTCTGCCATTTTCACAAACTGCTAAATTATCTCGTATTAGCCAGAATTTATCACCAAATT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATATAAACAATTAATAATAGGCTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 172991-173158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDN010000003.1 Campylobacter coli strain YZU0719 NODE_3_length_217027_cov_126.312934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 172991 36 91.7 30 .GG...............T................. ATTATTACTTACTTAAGGATTAAAAATGAC 173057 36 100.0 30 .................................... CATAATGATGATATTAATTTTATTATAGAA 173123 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACACAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACT # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.79%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //