Array 1 1226-118 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDV01000006.1 Enterobacter hormaechei strain ST108:941726609 MIRA_c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1225 28 100.0 32 ............................ TTCTGGCGTGTCCGGCGTAGGCCGTCCGGTCA 1165 28 100.0 32 ............................ ATAAAATGGTTATTGTAAACGCAAAAGTGTCA 1105 28 100.0 32 ............................ CGGCTGCAATTAAGGCTAACAGTTATCTTCAG 1045 28 100.0 32 ............................ AGGCTCATCAACTTTATTCGTTGCCTGGGTCA 985 28 100.0 32 ............................ GGCTCGTCGCTGACTTCTTTGTCCCATACAGG 925 28 100.0 32 ............................ GCTTGGCCTGACACATACTGTATTTAATCCTC 865 28 100.0 32 ............................ CTGTGGTGTGCCTGGACGCTAATGGTCGCCTG 805 28 100.0 32 ............................ ACGCCGGAAATGCTGTTATCAACGTAATTCTC 745 28 100.0 32 ............................ AGCAAAACGAATCATTTCGATTAATTCTTGCT 685 28 100.0 32 ............................ TGTCACTGGCGCAGAACGTAACTCCCCACGTA 625 28 100.0 32 ............................ GGCCTTCGTGAGCGTGTTATCTGGATGATTCA 565 28 96.4 32 .......A.................... GTGACGTTCCCGCAAATCATCTCCTGAAGCAT 505 28 100.0 32 ............................ AAGCACGATCTCAATAATGTTCTCTCAGTGAT 445 28 100.0 32 ............................ TGGGCGTAAGCAACTGCTGAAATGAAATCGTT 385 28 100.0 32 ............................ GTTGCGCACTGAGAGACTGGCTCCGTCCATGC 325 28 100.0 32 ............................ GCGAACGCCTGCCTGATTGACAGGCCACCCTC 265 28 100.0 32 ............................ AATGGCCTTATAGCGAGGACCATCAGCAGCCA 205 28 100.0 32 ............................ TGGAAATTGACAGCCGGGAAATTGAGATCACA 145 28 78.6 0 ...................T.A..CTCC | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.7 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGTTGCCTCGGTGCTTATCTGGAAGAAGTCAAAACCGAACTCGCAGAATCAATGAGCGATTTCCGGGTGGTTGAATTTGACGACGAGGCGGAACGGCCAAAGGAAAAAGAGTGGCTTCTGGAAAGTACTGAAACCAAATGCGATTACTGCCGGGCATTAAACCACGTGCTGCTGGTGTCGCATTTTGACCGCGAGATGCTGCCCCATCTGACAGGATTGCTGCATGACATTACACATTCGATGGCGACAGATGTGGCTGCACCTGAATATGGAAAGCCTGTAATCCATATCATTAATTAAGTTTAGTGTCGCGCGTCGGGGAAGGGACTCCGGCGCGGTATGTCGCAACCATTTTTTCGAGTGGTTCTTTAAGTTATTGATTTTTATTATGAGAATAAAGGCCGCAGAAAAAATGGTTTTAGGTAGATATGTTGATTATTTTCTTTTCGAACAATAAGATGGCGAAGATTTCTTCCA # Right flank : CCTAAATATTCACTCCAGCTATTTTAAAACCCACAATCATCACCACAATCCTCGTTGTATTTTAAATAAACTCAATACTCATTCACCCCACAACCATATTCCCTCATATATATTATTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 17049-16599 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDV01000006.1 Enterobacter hormaechei strain ST108:941726609 MIRA_c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17048 28 100.0 33 ............................ CTCACAAACTATTGAGATGATTAACTGATGGAA 16987 28 100.0 32 ............................ AGTCTCTCACTGGAACGGGAATAACAGCTGGT 16927 28 100.0 32 ............................ GTAACCATCGCAATTCTTTAACCATTCTGGAA 16867 28 100.0 33 ............................ TCTTTTATTTTCGAGCATAGTCACGGCACAAAC 16806 28 100.0 32 ............................ GGAACCGCAAACAGAGAAGCGCCACCGCCGAC 16746 28 100.0 32 ............................ AGTGGTCGATGATTCGTGCACGCCACTGCTCT 16686 28 100.0 32 ............................ CTGAGCTTTGAAGGCGAAGTGCGCAAGAAGGA 16626 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CAGGAACCCGCACAGACGGCGAGTTCACCCGTAAGCTGCGCTTCGGCACCGGCGGCAAAGGCGGCGACCTCTTCATGGCGGGTGGGCATCCACTCAATGGTCTTCATCTTGTTAAGGCTATCGCTGAGTCCGTTCAGAGAGTCGCCAGTGACGCCCCAGATACGCTTTACGCCAGCCTGCTCAAGGGTTTTCGCTATGTATGCAGCCACGGTTTGTTTCATGGTTGTCCGTCTCCTTTTTGTGATATCGCTTACAAGCTTAGAAGAAAGTCGCTGTATTGCCTGCTCAGTACTCTTTAAGTACAGGTGGTTTTTCTGCGCGACGCGCCGCCAGCGGGCTGAGGTTGGGGCGGGCGGAAGCGGGTTTGCAGACCCTTTTTTCCTGATGATGCATAAGTTGTTGATTTTATATGGTTGGGCTGAAGGGGAATAAAAAAGGGTCTGGAGGAAGTTTTTGAGGTATTGGTTTATCAGACAAAGGGATAGGTGTAGATTGTTTCA # Right flank : TCTTGCCTGATTTGCTCATGCCTTTAGTCACGGTTCACTGCCGTACAGGCCGTAGGCACAATGTAGGCCGGGTAAACGTAGTGCCACCCGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGGTTCCAAAGGCAAATGCGCTGGCCTGCACGGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGTTCCAAAGGCAAATGCGCTGGCCTGCACGGGCAAAAAGCCCGGTGGCGCTGACGCTTGCCGGGCCTACAGGGTTCCAAAGGCAAATGCGCTGGCCTGCACGGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGAGTTCCAAAGGCAAATGCGCTGGCCTGCACAGACAAAAAAGCCCGGTGGCGTTGATGCTTACCGGGCCTACAGGTGAACCGCGAAAGATTATGCGAGCACAAGATCGCCTTGCGGATGGCACGAACATGCCAGCACATAGCCCTCTGCAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 506-118 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDV01000302.1 Enterobacter hormaechei strain ST108:941726609 MIRA_rep_c302, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 505 28 100.0 32 ............................ AAGCACGATCTCAATAATGTTCTCTCAGTGAT 445 28 100.0 32 ............................ TGGGCGTAAGCAACTGCTGAAATGAAATCGTT 385 28 100.0 32 ............................ GTTGCGCACTGAGAGACTGGCTCCGTCCATGC 325 28 100.0 32 ............................ GCGAACGCCTGCCTGATTGACAGGCCACCCTC 265 28 100.0 32 ............................ AATGGCCTTATAGCGAGGACCATCAGCAGCCA 205 28 100.0 32 ............................ TGGAAATTGACAGCCGGGAAATTGAGATCACA 145 28 78.6 0 ...................T.A..CTCC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : AATTAAGGCTAACAGTTATCTTCA # Right flank : CCTAAATATTCACTCCAGCTATTTTAAAACCCACAATCATCACCACAATCCTCGTTGTATTTTAAATAAACTCAATACTCATTCACCCCACAACCATATTCCCTCATATATATTATTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12-519 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDV01000303.1 Enterobacter hormaechei strain ST108:941726609 MIRA_rep_c303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 ............................ CTGTGGTGTGCCTGGACGCTAATGGTCGCCTG 72 28 100.0 32 ............................ ACGCCGGAAATGCTGTTATCAACGTAATTCTC 132 28 100.0 32 ............................ AGCAAAACGAATCATTTCGATTAATTCTTGCT 192 28 100.0 32 ............................ TGTCACTGGCGCAGAACGTAACTCCCCACGTA 252 28 100.0 32 ............................ GGCCTTCGTGAGCGTGTTATCTGGATGATTCA 312 28 96.4 32 .......A.................... GTGACGTTCCCGCAAATCATCTCCTGAAGCAT 372 28 100.0 32 ............................ AAGCACGATCTCAATAATGTTCTCTCAGTGAT 432 28 100.0 32 ............................ TGGGCGTAACTAACTGCTTAGTTGAAATCGTG 492 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : ATTTAATCCTCG # Right flank : GTTGCGCACTGAGAGACTGGCTCCGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [13.3-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55-682 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDV01000318.1 Enterobacter hormaechei strain ST108:941726609 MIRA_rep_c318, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 55 28 100.0 32 ............................ TTTACGTACTGCAATAAATTCGTCTTTTGTAA 115 28 100.0 92 ............................ GATGACGGCACGACGGTCGCGATGTTTTTATAGTGCACTGSCGTACAGGCAGCTTAGAAACATCTGAGTCAGTCGTGCGAGCTGACGTTCGC 235 28 100.0 32 ............................ CGTATGGTGAACTCCGGTACCGAAGCGACCAT 295 28 100.0 32 ............................ CCGTAACGGCGTGGCGCAGCCGCTGCGTCTGT 355 28 100.0 32 ............................ ATGACAAAATTGAAGCTGTTTTGGAAAGGCTG 415 28 100.0 32 ............................ ACGATTCCCGGTAGCCCTAAGCCCTGGAAATC 475 28 100.0 32 ............................ GTGTACTTCGACGGATATACCCACTACAGCAC 535 28 100.0 32 ............................ AGAAACGCTATTAAAGGGAAAAATATTCATAC 595 28 100.0 32 ............................ ATTTCAAACTTTTCCCGGCCAACATGTATAAC 655 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 10 28 100.0 39 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCGTACAGGCAGCTTAGAAAGACGTGAAAAACATCCACGAAGCCCGGTCTTTTG # Right flank : TGACGGGCAGAAGTACACCGATACGCCGATCC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17040-15567 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDV01000026.1 Enterobacter hormaechei strain ST108:941726609 MIRA_c26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17039 28 100.0 32 ............................ TTTACGTACTGCAATAAATTCGTCTTTTGTAA 16979 28 100.0 32 ............................ GATGACGGCACGACGGTCGCGATGTTTTTATA 16919 28 100.0 32 ............................ CATCTGAGTCAGTCGTGCGAGCTGACGTTCGC 16859 28 100.0 32 ............................ CGTATGGTGAACTCCGGTACCGAAGCGACCAT 16799 28 100.0 32 ............................ CCGTAACGGCGTGGCGCAGCCGCTGCGTCTGT 16739 28 100.0 32 ............................ ATGACAAAATTGAAGCTGTTTTGGAAAGGCTG 16679 28 100.0 32 ............................ ACGATTCCCGGTAGCCCTAAGCCCTGGAAATC 16619 28 100.0 32 ............................ GTGTACTTCGACGGATATACCCACTACAGCAC 16559 28 100.0 32 ............................ AGAAACGCTATTAAAGGGAAAAATATTCATAC 16499 28 100.0 32 ............................ GGCACGCTGTCGGCGGGCAGTTAGTTGAAGTC 16439 28 100.0 32 ............................ ATTTCAAACTTTTCCCGGCCAACATGTATAAC 16379 28 100.0 33 ............................ TGACGGGCAGAAGTACACCGATACGCCGATCCC 16318 28 100.0 32 ............................ AATCAACGTGAACTTTCATGGCGCAGAACTGT 16258 28 100.0 33 ............................ TGGCAACTCGATAACGGTGGTTTTACCACGCGC 16197 28 100.0 33 ............................ GACGTGAAAAACATCCACGAAGCCCGGTCTTTT 16136 28 100.0 32 ............................ TTCATTGTGATCATGCCAATCGGTGTATGGTT 16076 28 96.4 32 .........G.................. TGCCTGACTTCCTTCGACTGGGTGAAACGTTC 16016 28 100.0 32 ............................ AGCATCATTCCGCGGCGTGCCGTTCAAAGTCT 15956 28 100.0 32 ............................ CGCGTGCTGGTGCAGAACGACAGCGATATCCA 15896 28 100.0 33 ............................ AGCCGCCTGTTTACCAGTGATGAAGATGCGTTC 15835 28 100.0 32 ............................ TCGTTGCGGGTTGATCAGCATGTCGTCGATTG 15775 28 100.0 32 ............................ TGTGAACTGAATGAGAACGCCGACGGCGTTAG 15715 28 92.9 32 C.....................C..... TTGTTGCTGATCACCCTCCCGTTGTCACCCGG 15655 28 89.3 32 ..A......T..........T....... CGTTGAGTTTCTCGAGCCACGGTTTTGACATT 15595 28 85.7 0 ..T.................T...T..C | T [15571] ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGCGCCACACGTTCGCTCTCGTCGGGCGTCAGCGTCCGGCCCGTACTTTTGCGGCGGGCAACGTTACGCTCGTTAATTCCCGTGACGCGTAAAATCTCCGCTTTCGACATGTCCGTCCACTCGTGAATATTGTCGAGGACGCTGACGGGTAATCCTTGATTGAGATATTCAATCAACCGCATGCCTCTGCTTGCAGGTAAACCGGCGTAGCGCCACAGCGTGTTATCAGCCGACCTTTGCGCAGGAACCCATGTTCTCATGATACCTCCTGAGTGATGTCATTTGTCATGAGTAAGTATAGCCATTTGTCAGAGAGTATGGAACGGGTGTTTTTTGTTCAGGGTGGGGTAAAAGAAGGATGATATTTGACCCTAATTTTTGCCCAGAATGTAATGTATTGATTTTTAGATTAAAAATCCTGGGGTGTAAAAAAAGGGTTTGAGCAGTGTTTTTAGCTTTTTTTGTATGAAAATCATGATGGTGGAGAGGTATTATTTCA # Right flank : ATCCAACGCAGCAGCATTTCCCACCGCATCCGTGCACCACCGCACAACCAACACAAAACCCGAAACCAAACCCGAAACCCAACCAATCGTTCAAATAATCGACTGTGCTAACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCCTCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //