Array 1 89404-88519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBE010000050.1 Salmonella enterica isolate 27696_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89403 29 100.0 32 ............................. CAACGATTTGGCCCCGACATTTGACACTATGC 89342 29 100.0 32 ............................. CCGCACGATGAAACGCCTGAGCTTATAGATTC 89281 29 100.0 32 ............................. GCTTTTGATTCCGGGAACCTCAACGCATAGTC 89220 29 100.0 32 ............................. ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA 89159 29 100.0 32 ............................. CGTACATCCGGCATTTTCTGGAACCTGGTCAT 89098 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 89037 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 88976 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 88915 29 100.0 32 ............................. ACCCGACACGCGTGCGCGTATTTGAGAATGAC 88854 29 100.0 33 ............................. CCGTTTGGTGTTGATGCCGCAATTGCGCTAAAA 88792 29 100.0 32 ............................. TTTTGAGAAATAGCCATCTTTTTTAACTAACT 88731 29 100.0 32 ............................. TTGCTAAAATAATTCAAAATGAAATCATCAGT 88670 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 88609 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 88548 29 100.0 0 ............................. | A [88521] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTTGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100424-101652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBE010000073.1 Salmonella enterica isolate 27696_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 100424 29 100.0 32 ............................. AAGATGCTGGGTGTGTCGCAGGGGACGTACTA 100485 29 100.0 32 ............................. GTAACGCTACCGAATCACAGCGACCTGGTGAG 100546 29 100.0 32 ............................. GCCGACCTGCTTACAGGGAGAGCCTGCCCCGC 100607 29 100.0 32 ............................. CGTGCCACTCTGGCGGGAATCCCATTAGCCAG 100668 29 100.0 32 ............................. CGCTCGCCAATACGCGGAAAACTGTCAGCGTA 100729 29 100.0 32 ............................. GTTAACGCTGGTTAATACCGAACGCACAATCA 100790 29 100.0 32 ............................. GCGGTTTAGGATCTTTGCGTGGCGCGCCGCCT 100851 29 100.0 32 ............................. TTCGCTGGCGCTAACATCTAAAATACTCCTGT 100912 29 100.0 32 ............................. AAAACCCGCATTTGCCATTCCCTGGCGAGGAA 100973 29 100.0 32 ............................. GCAAAACTAACGAAGAAAGAACAGGCCTGGAT 101034 29 100.0 32 ............................. GTACGAGATCTCCATAGCCACCTTGACCGCCG 101095 29 100.0 32 ............................. TCATATATACTACTAATTGGGGGCCAGGTTCA 101156 29 100.0 74 ............................. GATTCAGCCCGGATTGACCACATTGCCATTGTGTGTTCCCCGCGCCCAAACAGCGCTCCGATGCTGTTCTGGAC 101259 29 100.0 32 ............................. CCGCTTTTTTCGTGCTACCGGCAATCACTGCG 101320 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 101381 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 101442 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 101503 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 101564 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 101625 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 20 29 99.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGCCCCTCTACCGATTG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //