Array 1 45003-43780 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIO01000002.1 Streptococcus agalactiae strain UMB0767 .21837_8_79.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45002 36 100.0 30 .................................... GCAGCAGGAATGACTCATCTTGAAAATGAT 44936 36 100.0 30 .................................... CTTTAAGTATCGGCAATATTTGACGGATAT 44870 36 100.0 30 .................................... AACCGTCGGAAACCAGTCATCAAATTTTTC 44804 36 100.0 30 .................................... TTTTTTTAGTTCTCTCAAACATTCACTATA 44738 36 100.0 29 .................................... TGCGAGTTAGCAATTAATTCTAAGAAGCT 44673 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 44607 36 100.0 30 .................................... TAAAGCTAACGTTAGTCGTTCGCTCGTGGT 44541 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44475 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44409 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44343 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44277 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44211 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 44145 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 44079 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 44013 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 43947 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 43881 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 43815 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //