Array 1 663222-664379 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040423.1 Dolosigranulum pigrum strain KPL3043 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 663222 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 663288 36 100.0 30 .................................... ACAGCGGAGCTTGAGAAGTATCTGAATGGG 663354 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 663420 36 100.0 30 .................................... AATTGACGTTGGTGTGATGAGTGGCTTAAT 663486 36 100.0 30 .................................... GAATATATTAAAACATCAGGACAGGGGTAA 663552 36 100.0 30 .................................... GTCAGACCTCGTCAAGCCATCCATAGCTTT 663618 36 100.0 30 .................................... GTTGACAACTAAATTTAGATCTGATATACT 663684 36 100.0 30 .................................... TTTTATTCTTCGAATTAGTCATGCTATAAT 663750 36 100.0 30 .................................... TGATCGCCTGCTTTTGTTATCGTCTTCATC 663816 36 100.0 30 .................................... AAAAACTAGTTGACAACTTATGATTATAAT 663882 36 100.0 30 .................................... TTTCTTGTCAAGTACTTTTCTAAAATTTAT 663948 36 100.0 30 .................................... TACAACGCTGCTCTCCCATAAATTCGCACG 664014 36 100.0 30 .................................... TCGCCTAAATCTAAACCGTCAATATCTCCA 664080 36 100.0 30 .................................... GGATGTTATTTTTGAACCGTGTCTACCAGC 664146 36 100.0 30 .................................... TATTCGTGTTGTGTATTGTTGAGTTGTTGT 664212 36 100.0 30 .................................... GCTAATATTGTGCTACCAAAGGCGGTGGCG 664278 36 100.0 30 .................................... AATCGTTAAAGAAGTACAGCGCGGTATTCG 664344 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ACTAATCAAATTACTGAACTGATTAATGCAGAGGTACTGAATCATGAATTAGATTTAGAACTTGATGAAATTACAATCCAGGAAGTACTTATCGCTTTAGGAGTGAAGATAGAAGTTGATACAGATACACTATTTGAAAAGATGTTGGAAATTTTTCAAGTCTTTAAATATTTGCGAAACAAAAAGTTACTGATACTTGTAAATACAGCTTCATATTTTACAACCGAGGAGCTTAATGAAATGGCACAGTTTGTCTCATTGTTACAGATGAATGTGCTGATGATCGAACCAAAACTGACTGATGCCAATATTACACAATATATCCTGGATTCGGACTTCTTTTTAACCATCAAACATGGTAAAATGAAGTAGAAGATAAACTAGAAAAATAGGAGTCGTTTAAAGCTGAAGTTTTGCATGGACGAATGGCGCGATTACGAAATTTTGTGCAAATTTCTTTTTAAAAACCATGATTTTTTAGAAAAGAAATACTGTGCGAG # Right flank : CTTGTCCTAGCAGAATACTAGCTGATGTCTGTGAGCTAATTTAGCAGATGATCCCCTTGCTAGACTATGAACTGACTGCTCTTGACGTCGATACACGCGATTAAAAACTGAAAAATTGGATAAAAAAAGAAAAAAAGAAGGCGTTTAAAAAAAGGGGTGTTTTTTTATGATCAAGCTTTTTTTAGGAGTTTGACATAACCCAATAAAAAACAGGACTAAGACCAACTGAAAAGTTGGAAAGAAAAAAGACCCAACGCTAAAAGTGCGCTGAGCCTTGTGGTAAAAGCTTTTCTATTCATTTTCTGAGTTTGTCATATTTAGCATTAAGACAAACTGCCACTTTAAAAATTATAAGCTATCCAGCGACGCATAATACTAATAATGCACAATATCGACTACCAATTTTATTTTCTATACTTTATGAATATGGAATTTGCTACATAATTTAATTTTTATCTCTACAGTCCTTTTAGATATTTAAAAATTAAGGCTTGGCTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 666277-666906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040423.1 Dolosigranulum pigrum strain KPL3043 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 666277 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 666343 36 100.0 30 .................................... TCGCCTAATGCTTCATTAAAGCCGTCAATT 666409 36 100.0 30 .................................... CTTGAAGAGATATTCACTTTGGATTGGCGT 666475 36 100.0 31 .................................... AATCTTTTACGTGTATAATAAGTGTGCAAAT 666542 36 100.0 30 .................................... AGATGTATTGTTTGAATTATGTAATGTGTT 666608 36 100.0 30 .................................... GCGTGATAGTAGCTTCTTGTCATACATTTT 666674 36 100.0 29 .................................... TATGTTCGATGCCATAGCGGAAGGACGAG 666739 36 100.0 30 .................................... CCAGAAAATAAAAGAGCTGCGAACGGACAA 666805 36 100.0 30 .................................... AGTCAATTAATCGATATGGAATTATTCGAT 666871 36 91.7 0 ..............................T...TT | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.2 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ATCAACTTTATCAGGCTATAAAATATGCGAAAATAAATAAAAATAATATGAATGATATAAGTTTTGAACAGTTTTTATCATTGTTTAATAGCTATAAATTGTTTAATGGATAAATCTAAAGGACTGCCTGAAAGCAGTCCTTTAGATTTATTTGTTGCATATAATACTACTAATGTTCATCAATTTTCAGTATTGAGTTTTACTCAATTCTTATTGTGACAAACTCATTTTCCCTTAAGTTTTTTAAAGCGTTCTAAACTTTTCTTAAATTTTATTTGAGCTTCTTCTGACATTGTATCATCAGTTTTCACTGGATCAGATGCCCACTCAGGCAAGTTTTCAATTTTTCTCTTACGTTTTTTATATTTATATTTCTTCGCCAGTCATAAAATTAATCATTGGTACTGGATTCGGATCTTCGTATTCTTTAAACCGAATAACGAAGCGTTGAATTTTATTTCCTTTTTTTGCTTTGATTTTTTCAATCGAAAGTTCATCAA # Right flank : TGATTGGTCAGATAACTTATGAGATTTAAAGTTATAGTGTATTGATTTTTGATGTAATAATTATTAATGAAACATATAATCCTGTTTAATCTTCTAGTCAAACTAGCTAATTAGATAGGATTTTTGTTTATTCAGGAGACAAGCTACTTGTGAAGTATTTCCCGTGATTATCAGTCGAAATTGTGGTGGGAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATTGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATAGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATCGTATTGGGGTGGGATGAGCGGTTAGTTGAAGTGCTTGAGTCGGGTGAACATCAATTGAAGTGGATTCAACTGCCAACAGCTGGCGTGGACAAGTTGCCACTTGATTTACTGGCGCAAGAAGGGGTGCGGTTGACTTCAGCAAGCGGGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //