Array 1 36581-36306 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUP01000003.1 Lactobacillus japonicus strain NBRC 102478 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36580 28 100.0 33 ............................ CATCTCGTTCACTTGTTTGTCTTTTTCTAATTT 36519 28 100.0 33 ............................ TACATGGTATCAACCGTGTCAACAATCGTATTA 36458 28 100.0 33 ............................ CCGTTAGTTACTTTACTGCAAGCCGGAACGGTT 36397 28 100.0 33 ............................ TCCACCAGTTACAGAGGAAGACATACCTTTGAT 36336 28 100.0 0 ............................ | ATG [36312] ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCGGGGCTGGCTTTGAGCTGGTTGGTCATCGTGAGACGGAATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCTATGCTTCACCGAGCTAAAGGGCACGGCGTTCGTTTAAGTCGTGTGACATTTGAAGGGCTCCTATGTGTCAAGGACCTACCGACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTAATGACAGTCATTCCTGAAGTACAGTGATTGACTTTCATCGGTGTTTACTGGATTGGTGGGCCCGGAACCAGTGCTGGCGAACCAGGTATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGTTATCCTCGAAGTCAAGCTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGGGACGGGATCTGTCAAGT # Right flank : TTGGCTTGAATGCAGCAGTGACCCGTACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGAACCAACGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTAAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACGCCGGCGAACATTTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAGGTGATGAGCGAGATCAGGAAGATCAGCGTTGAGACAAAGAAGAATAGGGACCAGATGATGCTCAGCGTTTGATCAGTAATAAAAGCCCATTGCTTCAAATACTTGCCGGGATGACTGGCAACTCGTTTAAAGTTGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44899-45476 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUP01000003.1 Lactobacillus japonicus strain NBRC 102478 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44899 29 100.0 32 ............................. TGTATGGTCGGTCGTGTAAACCCAAACATCAG 44960 29 96.6 32 ............................T CACCTGACCACAGATCATTATTACCTTGCTTT 45021 29 96.6 32 ............................A AACATTTGCCCCGCGTCATAATATCTTTTTAA 45082 29 100.0 32 ............................. ATAGAATGTTTGGACTCCATTTACTGCAAGTA 45143 29 100.0 32 ............................. AATCAGAACCGGTTAAACCGGCTGTAAAGGGG 45204 29 96.6 32 ............................T GAAACCTCTGTTACTGTGATCAATGGTTATGG 45265 29 100.0 32 ............................. ACTTGCCGCACGGCATTTTCATACTGACGAGC 45326 29 96.6 32 ..............C.............. GGTTTCAAAGCCGCTAAAGACACTAAGTCTGG 45387 29 93.1 32 ..........................T.T AAGCAGATTGCCACGTTACAAGAAACCATCAA 45448 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : CGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAGCTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTATGTGAGCAAGAATCGTTGAAACAATAAATAATTTGCTTTACAGATGAGATATGCCTGTTGCAAACCTAGTACTTGGTGTTCACCGCATAGTTATTAATCATAAAGTTATCTCCTAGCATTTTGTATCACATAATTTGTGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCAATACCATGAAGGCCGCCTTGCTATAAGGCCCCCTTGCTTGTTTCGTCATATTAATAGTGTTTATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTGCTGCTATAATAGGCTTTGTTTAGT # Right flank : AAACAAAGCCATAGATAAAACAACAAATCACTTTCGAACAACTGCGACTTCACAAATATAAAAGTGCATATTTTACACATCAGCACTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATATGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCATTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTTACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCTTTCTATGTCATTTTCTATAAAAGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTATTACCAATAAAGACCTTCATTTCACTCAACGCCATAGCTATCGAAACGCCTTGCTCATTAAGCATGTCACGTGTGATTCCAGTAAGCGCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGTCG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 47749-48264 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUP01000003.1 Lactobacillus japonicus strain NBRC 102478 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47749 28 100.0 33 ............................ CAACTATACCAGATTTTAATTATTTCCCGTCTT 47810 28 100.0 33 ............................ TCTTCTTTTGCCAAAGGTTTATCATCAACAAGT 47871 28 100.0 33 ............................ TTGGAAACCGCCCCACCGACAAGCGCGCCCCCG 47932 28 100.0 33 ............................ CGGCATGTAAAGCTTCGGTTTAATAACATCAAA 47993 28 100.0 33 ............................ TACGACTTAACTTATGATGATTCAACATGTCAT 48054 28 100.0 33 ............................ CCTTCGGCTTGTCACTCTCTAACGTGTCACCGT 48115 28 100.0 33 ............................ CATTAATTCCATAAGCCGCCCTGGTGCTTTAAA 48176 28 100.0 33 ............................ TGGCGCAGTTGCCGGTTTGATTGTTAGTGCGGC 48237 27 89.3 0 ...............G.-A......... | T [48262] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.8 33 CTATTCCCCGTACATACGGGGGTGATCC # Left flank : TAATAATTGCTGCGGGTACAAAAACCACGCCACGAGCATCACTGACTCGAATCGCACTATCTTGGCGATCGAGTTTGGCATGTTCCAAGTATAAAAATGTTAATCGATCATGAATTCGACTCAATTCTGACAATTCTGGCTTTTTTGCTCCAGATTTTTTCATTAGTACTGCACCTCCAAAATATCTGCATCAAGTTCACACAGTTAACTCTCAAAAAACAATTTTTCCATGAGTAAAGAACATAATGCGCTTTTAAATATAGGATAAGTATTGGTCAAACGCGAAAGAATACGCTTGCATCTTGCTGTAACCCAGATGCTCAAAAAAACTCAGAGTATCATATTTCATCAAAATCAAAATTATCGCGCCTTCATAATTATAATATCATAATTCATTTGCCATAAAAAACACATATATGTATACTTATATGAGATACAAAGTTAACTGAAAATTGCTCATCAGCTCTTTCATATTATTGATATATCACCATTTCTTTAGT # Right flank : CGCCTATTTGTTCGACGGGAATTTCTTCCCCGCTACAGGAAACCCATATTTTAATAAAGATTCAAGTCATCCCTAATTATACTGTTGAACATGAATCCAGTTGGATCCGGTTAGCCATTCGCAACATATATAGAAGAAGGTGAAAAAAGTGTTTGAATTACTTGAGGCTATTATTGACATCATCAAACATTTTGGAATGGCACTTGTATTAGGATTTTTAGCATATGCTCTAATTTATATAATTATCGGTGTATTTACGATGAATTAGATACGCTACTTTCCATAACATGAAATGGAATCTTCAGTTACTCTTTGGCGTACTTTCTACTTACTAATGCTTAATTTAATCCTTTATCTTAATCAAAAAGTATTGACGAAATATAGACATATGCAAAATAATTTCAAACCAGTCAAGATCAAACCAACTTGCTGGCTATATTTTCTAGTCGACCCATTTCGTTTCACATTTTAATTCAGCCTGATTATTGCAATATTTTCTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTACATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 50675-51681 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUP01000003.1 Lactobacillus japonicus strain NBRC 102478 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 50675 28 100.0 33 ............................ CGGGCGAGATTTCGGATCGTGGCAAGTTCTTTG 50736 28 100.0 33 ............................ TGTTTATACTATCACTTGGTAGGTAATTTAGCT 50797 28 100.0 33 ............................ CAGTTTTACAAATTTACCAGCCGCCGTCGAAGA 50858 28 100.0 33 ............................ TTATTCACCCTCATCGATATCAGGTTCGGCATT 50919 28 100.0 33 ............................ TACTATCAACTGAAAGACCTGTACCATCATGTA 50980 28 100.0 33 ............................ CTAATATCAAAATCTAAGTTATGATAAAATAAT 51041 28 100.0 34 ............................ CAAGAAGACTTATTTACAATTTTTACAAGCCTTA 51103 28 96.4 33 ......................C..... TAAGCCGTAAAAATATATATCGTTATGATTGGA 51164 28 100.0 34 ............................ CATCAGGAACCGGCTTATTAGTAGCTTTGATTTG 51226 28 100.0 33 ............................ TGTCTCGCCCCTCGTATAGAAGCAGTGATGCGT 51287 28 100.0 33 ............................ CCTGCCAGGGAGATAATTGCAGTTAGTAGGCTT 51348 28 100.0 33 ............................ TGGTCAATTAACGGGTATCGCTGAACAGGTTAA 51409 28 100.0 33 ............................ TCATTATCAACATCTCCATCTTTCTTCACATAC 51470 28 100.0 33 ............................ TGGTCCCGTCAGCGCTAGTCGTCTCATCTTCGT 51531 28 96.4 33 .C.......................... TAAAGTGTTGAAAAAATCAAGAACATTCTTGTT 51592 28 100.0 34 ............................ CGACCTTGATAAATGGGTGCGCTATTCCTTGGAG 51654 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.2 33 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : GAAAATCGGCGCCCAATCGACCTTAAAAAACTAATCAAGAAACGTGGGACATTTGCTTGGGAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACGATATCTTAGAAACCATTGCGGGTTTGCTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATTGAGCAGCATCATATGATTAGCAAGGTAGTTATTGATGGATGGGAATGAGTTGACGTGTATTACGGCTCACGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTGTTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : TAGGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGATGGTATCAGACTCGCTTATTTTAGCATCGCCCCCCGCTAAACTACCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTAAAATTGGCATTTAAAACACCACTGGCTGATCAGATGCGCCCGCAATCATTGGAACAGATGGTCGGACAACAGGATCTGTTGAAGGCAGGCCAGCCACTACGCCAGATTATTGATCAACATGTTAATATTCCACTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGCCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //