Array 1 243147-241483 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWB01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-025 NODE_2_length_692252_cov_31.0841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243146 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 243085 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 243024 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242963 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242896 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 242835 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242774 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242713 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242652 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242591 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242530 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242469 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242408 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242347 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242286 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 242225 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242164 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242103 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242042 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241939 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241878 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241817 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241756 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241695 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241634 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241573 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241512 29 96.6 0 A............................ | A [241485] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260531-259405 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWB01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-025 NODE_2_length_692252_cov_31.0841, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260530 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260469 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260408 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260347 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260286 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260225 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260164 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260103 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260042 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259981 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259920 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259859 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259798 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259737 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259676 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259615 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259554 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259493 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259432 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //