Array 1 6762-5406 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUDX01000003.1 Listeria innocua strain LIN67 NODE_3_length_350967_cov_81.7978, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6761 36 100.0 31 .................................... CTAATTTTGTAAATCCGTTCTTCATGGTCAA 6694 36 100.0 30 .................................... CTTACAAATTCCAAGCCTTACAAGTGAACT 6628 36 100.0 30 .................................... TTAATATTAGTATTTTTCACAGGCGTGGCT 6562 36 100.0 30 .................................... GGAAAAACTGCTTCAATTGATCGTCATACT 6496 36 100.0 30 .................................... ATGTAAAAACTTTTGACGGTCAAAGAATGG 6430 36 100.0 30 .................................... TTCGAACCGCGTAATTGTTGTTAGGTGCTA 6364 36 100.0 30 .................................... TCTTTTTTAAACCAATGATAAGGACTGTCA 6298 36 100.0 30 .................................... TAATGCTAAAACAGTAAAAACCGCATTCCA 6232 36 100.0 30 .................................... ATTAACAGAAGCGGAAATTAAAGGTATGCC 6166 36 100.0 30 .................................... CTATGTCCTTTCCATTACAAATTGTTTCTC 6100 36 100.0 30 .................................... AAATACAATCATCAAAAACAAAAATAAATT 6034 36 100.0 30 .................................... TTACAGTAAATCTTTCATTGAAAATCACGT 5968 36 100.0 30 .................................... AACTTATTTTTATGCCGAGTTACGGAGTAG 5902 36 97.2 30 ............A....................... CCTACTAATCCTTCATCGATATAAAAATGC 5836 36 100.0 30 .................................... AATAGTTGCTGAAAATAAGAAAGATCCTCG 5770 36 100.0 30 .................................... AAACGTCAAAGGGTTATTATCGCACAACAA 5704 36 97.2 30 ..................................G. AATTGATTCTCAAGATAATACATCGATATA 5638 36 100.0 30 .................................... TTTTCATTTTCTCAATTAAAGATAGTGCCG 5572 36 97.2 30 ...............A.................... TCTTAGAACAGAGCCATGGGACTCACTAAT 5506 36 97.2 30 ...............A.................... GGTTTATATTTGGTATAGTGAAAAATAAAA 5440 35 88.9 0 ..............C..........A....-...C. | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATTCTACGAG # Right flank : CATCTCTCAATCCACTCCAGCTAGAAAAGTTACACCATTATGAAAGAGAGGCTCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACCACTACATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTACCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //