Array 1 87883-85473 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXI01000016.1 Salmonella enterica strain BCW_6236 NODE_16_length_95577_cov_1.99233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87882 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 87821 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 87760 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 87699 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 87638 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 87577 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 87516 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 87455 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 87394 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 87333 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 87272 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 87211 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 87150 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 87089 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 87028 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 86967 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 86906 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 86845 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 86784 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 86723 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 86662 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 86601 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 86540 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 86479 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 86418 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 86357 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 86295 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 86234 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 86173 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 86112 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 86051 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 85990 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 85929 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 85868 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 85807 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 85746 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 85685 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 85624 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 85563 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 85502 29 100.0 0 ............................. | A [85475] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34746-35627 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXI01000037.1 Salmonella enterica strain BCW_6236 NODE_37_length_44526_cov_1.94748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34746 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 34807 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 34868 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 34929 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 34990 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 35051 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 35112 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 35173 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 35234 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 35295 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 35356 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 35417 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 35478 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 35539 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 35600 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //