Array 1 534-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFOR010000099.1 Paenibacillus alvei strain JR949 NODE_100_length_2586_cov_6.31529, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================ ================== 533 30 100.0 36 .............................. TTTTAAGATGGGTCCTTTTGTACAGGTTCAGGTTCG 467 30 100.0 34 .............................. CTTTCGGATTGGAATATTAACTCGTTCGTTAACC 403 30 100.0 60 .............................. GCAAGGAGTTGAAGATATTCGAATCCTTTGTTGTGATGATGCAGCCAAGAAAATAAATAA 313 30 100.0 36 .............................. TCTGTTTTATCCTCTATCGCGAACCGCTTTTTAAGA 247 30 100.0 36 .............................. TAAGTACCTCCTACAATCGGTCGATAGACTTGGGAT 181 30 100.0 36 .............................. TGAGAATGAAATAGAAGGATGGGAAAGAGAAGAATA 115 30 100.0 34 .............................. CCAGTCCGATAACCCCTATCGTTTTTACGAACTT 51 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================================ ================== 8 30 100.0 39 GTTGAACAGTAACATTAGATGTATTGAAAT # Left flank : TTGTCCGCCATCATGGCTGCAATGGCAAGCGGGCAAGTGATGAACGGAGCTGTAGATGCTGCCCATGCTGGACAGCTTGAAATGAATCTTCTCGCTTACCGTACCGCCCTGATCGGTGCTGCTGTATTTTTGCTCCTTGGCTTATGTGCCGCCTTCCGAATCCAGGACAGCGACGCCGCCGCGACCATGAAATCTCGGCAATCTTCTATTCCTGCGACGAAGCCTGTAAAGGCTGAAGGATAGAGGATAAAAGATCACGTATCTATGCCCAAATATTAGAATTTAATGCTTCAATATTCTATCTTTATTACAGAGATAGTCTGTTTTTCCCAACCGTCGTGGATAAGTGATAGAGGCAATATCCAAGTATAGTAAAGGTTTAGAGCAATTTTGACGAGTTTTCAGAAAATTCCGTTTTAGGTTGGGAAAATTATAGTGAAACCCGCTTGGTTGTAGTAAAATTGCTATATTAGTGTTTTGAAAAAGCCTGATTTATCTAG # Right flank : TCACAAATAAAATGCCAAAGTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 20-315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFOR010000076.1 Paenibacillus alvei strain JR949 NODE_76_length_10073_cov_6.02466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20 30 100.0 37 .............................. TAAAGGACCGGAATTTCGAAAGCATGATATGGCTAGG 87 30 93.3 36 ...........GT................. ATGGGTCGACGATATGCGAAATAAGGGAGTCTCGTC 153 30 100.0 38 .............................. AGACAGCGGAGACGAAGGAAACGAAGTTCATTCACAAA 221 30 100.0 36 .............................. AAGTCGCGGTAACGCGTTGGCATTGCTTCAGGTGTA 287 29 86.7 0 ...................A...-CA.... | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 96.0 37 GTTGAACAGTAACATTAGATGTATTGAAAT # Left flank : CATATTGATGAGCGCTAGAG # Right flank : TTAATAAAAGCGCCACCTATACTGTAGCGCATTCTCCTTTTGAAGGATATTAGTTTTAAAGTTTTATATAAAGACAAAATGATTCTTCCTAACAGTTGTAAATAGTGGTACTATAGTTATAGGAAAATCACACCATGTGTTACTGTTGATTTTAGAACATAATTTAAAGTCAAAAATTTCAATGCATCGCACGCTACAGTTAAATAATGAATTATTTAATTTGCTTTCATTCTATTTGCTCTACTATATCGTTTCATTACTAGAGTCTGCAATAGGTAATAATATTCAATCTACTTAGGAGAGGGGAACGATATGTACTTTGAATTAAAGGCGACGGTCATGCTGAAGCAATCGGGACATTATTTGGAATGGCCTGAGCGTATAAGTGCTTGGATCGGAAGGGTCAGCTTGCATGATCCCATGTTGAAACACTCACATTATGAAACCGCATACAAGCATTATGTGTATGGAGCACCTTATCCGAGAGAGAATGATGGAAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 9835-10061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFOR010000076.1 Paenibacillus alvei strain JR949 NODE_76_length_10073_cov_6.02466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 9835 30 100.0 35 .............................. TATTTTGGTTTTGCGTCCTAGATTGACTGTATAGA 9900 30 100.0 36 .............................. AATAAAGAATATCTATACCATCTGAAAGCCTGTACG 9966 30 100.0 36 .............................. CGGGGGTAGGCGAATCGTTGCGGACATTCGCCGCTC 10032 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 39 GTTTGACAGTAACATGAGATGTATTGAAAT # Left flank : CCGTTTATGCCTTTTCTTCTTAAAGAACGGAGATGAGCGAGGATGGGGAAGAACTATAACTATGTCATTTTAGTTTATGATATCGGAGAAAAGCGTGTAGGACGCGTATTTAAAATATGCAAAAAATATCTGGTACATTTTCAGAAATCAGTGTTTCGTGGAGCGATTACACCTGCAAATTTATTGAAATTGCGAGGTGAATTGAAGAAGGAAATTGATAAAGAATCTGATTTTGTAGCGATATTCAAAATGACTGGTGACTACGTGTTTGATGAAGAGATTATTGGGGTTAGATTGAACAATTCTGAGTCTTTACTACTCTAATTTTCCCAACCTCTTTCGTTTATACAATTGAAATAGCCTTAGTGCCGCAAGGGATTAGGGCGGTTCCTGACACGTTGTAGCATTATTCACTCACGGTTGGGAAATAAATAGCGAAAGCCGCGTGGCTGTAGTAAAATTGACTTATTCAAAGATTAGAAAAGCCTGATTTTACTAGG # Right flank : GTGTTTATTAGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 18442-17753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFOR010000068.1 Paenibacillus alvei strain JR949 NODE_68_length_18461_cov_5.14169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18441 30 100.0 36 .............................. AAATTATCGGCTTTTAAATATACTCGGAGGTGCATC 18375 30 100.0 36 .............................. GTCGATTGAATCGCGAGCTTATCGAAGCCGTTGTCG 18309 30 100.0 36 .............................. AGGAAAGGGTTGCACTGTAAACGAGCATAAGTAACT 18243 30 100.0 34 .............................. TCGAGAATATTGCAAAGGCTACAAAAGAGTATGC 18179 30 100.0 36 .............................. TACCAACCGCGCTTCCATGGGCCAACCAATGTTACA 18113 30 96.7 35 ......................T....... CGGCAAATGGGCACTACAAAGCTAGATTTTGCTTC 18048 30 100.0 36 .............................. ATGAATTCCATTCGCGCAACATCAACACATCGCCAG 17982 30 100.0 37 .............................. ATTGACGTTACCTTATATGTTGCTTTGTCCGTCTTCC 17915 30 100.0 37 .............................. TCTACTGGGGTCTCCCCCTTCCGACAATACTAAATGG 17848 30 100.0 36 .............................. CATAAAAGTTCCGCGTATGCCAGCACAGTTTTTCTA 17782 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.7 36 GTTTGACAGTAACATGAGATGTATTGAAAT # Left flank : AATTATGATCAGCATATAA # Right flank : ACTTTTAAACCGCAGGTGAAGGCCTAATGTACGAAGGATTAAACTAAACGAAGGAAGAAAGGTAGAAGTACGAGGTAGAATAAAATACGGCAACCCAAAAAGTCGAGTAGAGCTTTAGGGCCTCCATACTCGACCTTTTAGATTTAACTTACATATGGATCACCCATAATTGCAGCGGACAGTCCTTACTCTTTATTCTTCTCGGATTTAGATGCTTCAATAGCAGCGGCATCGACCGCTTGTTGGCCTTTTTCATCGATTAGAAATAACGCTTCATCAATGGTTAGTTTGTTGGCAATGACGTCCTCCACGATTTGGTTCCCGACACTTTTGAATGCGTTGATGATATCATAATGAACAGATTCATAAGGATTGTGATTGGATAGGGAAGCTTTAAGCATCGTCAATGGGGATAAGTCATGTCCCTTCACGGAAGCGATAAGTTCGGTTCGCGCCGGAAGTCCGTGATTGATTTCCGTGGAAGTCATAGCTCCTCCTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 4-1161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFOR010000122.1 Paenibacillus alvei strain JR949 NODE_123_length_1171_cov_7.37276, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 38 .............................. CTCTTATCCCTTGCCACACTTCCGTCAGCCACGTCCAC 72 30 100.0 37 .............................. TTGCCTATCACATTGCCTTGCACGTACACGTTGACTG 139 30 100.0 36 .............................. TTGTATGCCAAGTCAACGGCTGCCACCTTAAAGGTG 205 30 100.0 37 .............................. AAACAGTTACGGCAGGGGTTAAACTCCCACTCGATGG 272 30 100.0 36 .............................. CGACTTTATCTGTCGTAAGCCCCATGAATCGGTCGT 338 30 100.0 36 .............................. GACAATGAGTCAGCAAAAGTCGCGGTACAAGCGACT 404 30 100.0 36 .............................. TGTAGATGGCTGGGCTTGCTCTGCGGCTTCATTATT 470 30 100.0 36 .............................. GAAATTCGGGTCCGTGACTCCTTGTTACGTGCATCC 536 30 100.0 36 .............................. ATTCAGATCGCGACGAAACTCCATCTTGAACACAAT 602 30 100.0 37 .............................. TTTAAACAGGCAGTTGAAGTATTGAAGGGTAAAGGTG 669 30 100.0 37 .............................. CGAGAACATGCCCCCTTTCCGATTGTCTGCGCCGACG 736 30 100.0 36 .............................. ATTCGGCGAGCTGGTCGTAAATTTCCGCAAGCTGTT 802 30 100.0 36 .............................. GAAATGACGAAATCCCATATCAAGCAAGGGCGAGAA 868 30 100.0 36 .............................. AACGTGCTACAGCAGTAACGAACGGCCTTGACTTCG 934 30 100.0 37 .............................. ACGCTGCCCCCTCTCTAATCTGTACATGCGTGTACTT 1001 30 100.0 35 .............................. AACCTTTAAAGTTACTTCCCGTTCCTTTTGACGCC 1066 30 100.0 36 .............................. ACTAGAATTTTCAAGGAGTTTAATGGAGTTGAAAAA 1132 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 100.0 36 GTTGAACAGTAACATTAGATGTATTGAAAT # Left flank : CTTG # Right flank : AACTATTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 23-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFOR010000138.1 Paenibacillus alvei strain JR949 NODE_139_length_548_cov_6.27383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23 30 100.0 36 .............................. ATCAAACCTGATAAATCCATTACCCCGACCTCCTTC 89 30 100.0 36 .............................. ATTGATCCAGAAAACATGACTTTACGCGTGGTTTTT 155 30 100.0 36 .............................. TCGGTTAAACCGGATTGGGCTCGTGTTGAAGCAATT 221 30 100.0 36 .............................. GCGATTACGATCCCATTGGGAACACGGGTAACGTCA 287 30 100.0 37 .............................. TCAGGTAGTTTATCGGGATACGCTTCCCCTAAATGAA 354 30 100.0 36 .............................. CCGGATATGGAAATCATGAATGTTCACCACTTCCAC 420 30 100.0 36 .............................. AGTTGAGCCTTGATAAGTGAACCATATTCACTTGAA 486 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GTTTGACAGTAACATGAGATGTATTGAAAT # Left flank : TCGTTTATAATCATCTAGAATGG # Right flank : TAGTATATACCAAGGGCGCTCACTAAAAAACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //