Array 1 34-1615 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQY01000016.1 Phocaeicola dorei strain MCC060 NODE_16_length_220516_cov_38.359421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 34 47 100.0 29 ............................................... GAAGTTCGGTCGTTCAGATATCGAACGTT 110 47 100.0 30 ............................................... CTGCAGCAAAGTTAAAGGATGGAATATTGA 187 47 100.0 30 ............................................... TTTCTATCCAAGTTCTGAACTGCATAAACC 264 47 100.0 30 ............................................... CAGAAAGGGAGCCTTGAGCATAAAGATTAG 341 47 100.0 29 ............................................... TTTGCTGTCTTTGGCATAATTCTATACTT 417 47 100.0 30 ............................................... TGTATTTCCTATTAGGAATGAGGTAAGCGG 494 47 100.0 30 ............................................... TCGCCTCGTGAAATAATTTCGTACGAAACT 571 47 100.0 30 ............................................... TGCGGTACGGGAGGAATATCCGTAATCCCG 648 47 100.0 30 ............................................... TAATTTCCTTATGGCGACAACCACTAGCAC 725 47 100.0 30 ............................................... ATGGAAATAGAACTATATATTATAAATCTA 802 47 100.0 30 ............................................... CATAACCGAAAACTTTATCTCCTGAAATAC 879 47 100.0 29 ............................................... TTTTATTAACCATTAAGTGATAAGACAAT 955 47 100.0 30 ............................................... GCGCCTTCAATGTTGTAATAGCGCACGCCG 1032 47 100.0 30 ............................................... CTGGAAGCCCAGAAACAGCGTGATTGGCAA 1109 47 100.0 30 ............................................... TATAGCTTGCTTCTTCGTTTTTCCATAATA 1186 47 100.0 30 ............................................... CAAATTTGCAAGAAGGAGATTTGTTCATGT 1263 47 100.0 30 ............................................... TGTAATCACTAAACAGCAATTAAGTTTACT 1340 47 100.0 29 ............................................... TGTAGATAAACCTGGGTCGTTTGAGCAGC 1416 47 100.0 30 ............................................... CAGTAGCAAATGAATTACCAATAGCGCTAA 1493 47 100.0 29 ............................................... ACGCAGGTTGAGGGAAATCAGAAATAGCC 1569 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : AACGTGTAAAGGCATGGGAAGACGAGTTAACACG # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 121092-121454 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQQY01000013.1 Phocaeicola dorei strain MCC060 NODE_13_length_196082_cov_41.144352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 121092 33 100.0 32 ................................. ACCGGAAAGCCTGTTGGGAATCATGCTTCTGT 121157 33 100.0 33 ................................. TTTCAAGATGGAGAACACACGTTCCGGATTAAA 121223 33 100.0 32 ................................. TGGCCTTGGAACGTTTTGAATGATAAACCATT 121288 33 97.0 34 T................................ CTTAAGTCGTCCCGACTACCCTTCGGGCAGTATA 121355 33 100.0 32 ................................. TTTGATTACTTGTTTTACTTCTGCTTCCATAA 121420 33 84.8 0 ...........G.......A.A.......G.G. | AA [121438] ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.0 33 AGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Left flank : GATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAG # Right flank : CATTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTCTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAAATGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACACCCTACGTGGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.00,-7.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //